Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc181412g00001 ATGTTAGGGTTGACACATGTTCTGGTAGTAAAGTTGTATTTGTTCTATGATGCAGTTGTTATATTGGTCCCAACCAGAGAATTGGCTCTGCAGACTTCTCAAGTGTGTAAAGAACTTGGAAAACATTTGAAAATTCAGGTTATGGTAACCACTGGTGGTACCAGCCTAAAAGATGACATCATGCGTCTATATCAACCAGTTCATTTGCTGGTTGGAACTCCAGGAAGAATTTTAGATCTTGCAAAGAAGGGCGCTGATAAGCTTCTGTCCCCAGAGTTCCAACCTTCAATAGAACAGCTGATTCAATTTCTCCCTCCAACCCGTCAAATCCTGATGTTTTCTGCAACTTTTCCTGTTACTGTTAAGGACTTCAAAGATAGATATCTTCGAAAGCCATATATCATTAACCTTATGGATGAGCTAACTCTGAAGGGTATCACACAGTATTATGCATTTGTAGAAGAGAGACAGAAAGTCCACTGCCTAAATACCCTTTTCTCTAAGCTTCAAATAAACCAGTCAATCATCTTCTGTAATTCAGTCAATCGGGTTGAACTCCTTGCCAAGAAAATAACCGAACTCGGATATTCTTGTTTCTATATTCATGCAAAGATGTTGCAAGACCACCGCAACAGAGTATTTCACGATTTCCGCAATGGTGCATGCAGAAATCTTGTTTGTACTGATCTTTTTACTAGAGGTATAGACATCCAAGCAGTCAATGTTGTTATTAACTTTGACTTTCCGAAGAACTCAGAAACCTATCTGCACAGGGTTGGTCGTTCAGGAAGATTTGGACACCTTGGGTTAGCCGTGAACTTGATTACATATGAGGATCGCTTCAACTTATATAGGATTGAACAAGAGCTTGGCACCGAAATAAAACAAATTCCACCACACATTGATCAGGCTATATATTGTCGGTGA 927 0.3959 MLGLTHVLVVKLYLFYDAVVILVPTRELALQTSQVCKELGKHLKIQVMVTTGGTSLKDDIMRLYQPVHLLVGTPGRILDLAKKGADKLLSPEFQPSIEQLIQFLPPTRQILMFSATFPVTVKDFKDRYLRKPYIINLMDELTLKGITQYYAFVEERQKVHCLNTLFSKLQINQSIIFCNSVNRVELLAKKITELGYSCFYIHAKMLQDHRNRVFHDFRNGACRNLVCTDLFTRGIDIQAVNVVINFDFPKNSETYLHRVGRSGRFGHLGLAVNLITYEDRFNLYRIEQELGTEIKQIPPHIDQAIYCR 308
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc181412g00001 308 SMART ultradead3 5 149 IPR014001 -
Stsc181412g00001 308 Pfam Helicase conserved C-terminal domain 160 266 IPR001650 -
Stsc181412g00001 308 Pfam DEAD/DEAH box helicase 19 123 IPR011545 GO:0003676|GO:0005524
Stsc181412g00001 308 CDD SF2_C_DEAD 146 275 - -
Stsc181412g00001 308 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 19 288 IPR027417 -
Stsc181412g00001 308 Gene3D - 143 308 IPR027417 -
Stsc181412g00001 308 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 1 135 IPR014001 -
Stsc181412g00001 308 Gene3D - 17 142 IPR027417 -
Stsc181412g00001 308 PANTHER DEAD-BOX ATP-DEPENDENT RNA HELICASE 50 19 307 - -
Stsc181412g00001 308 SMART helicmild6 185 266 IPR001650 -
Stsc181412g00001 308 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 145 305 IPR001650 -
Stsc181412g00001 308 FunFam ATP-dependent RNA helicase DDX6 139 308 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc181412g00001 Stsc-Chr181412 10249 12790 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc181412g00001 1 301 Eukaryotic Initiation Factors Gene Family AT3G19760 36.909 9.09e-71 223
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc181412g00001 K12614 - rcu:8261850 561.992