Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc181411g00008 ATGGCTTCCACCAATGAGGAACGTTCTTCTTTGGTGAAGAGTGGTTGGTGGAGAAGTGATTACCAGAATATCTCAAACCATTGTAATTGGACTGCAATCACATGTAATGAAGCTGGAAGTGTTACAGACATTGCTGCACACTACTGGCCTTTCAATCTTCCTCCATCAACAATGAAGCTTCAGAACTTGAACCTCACTGCATTTCCCAGTTTAGTCACTCTGTACCTACCTCGAATGCAACTCACCGGAATCATCCCTGCCGAGATAAGTACTCTTTCGAAACTTGTAACTCTTGATCTGTCCTATAATCATCTTCATGGTGAACTTCCAAGATCACTTTCAAGTCTTACTCAACTCAAACTTCTTGATGTTTCCTTCAATTCTCTTAGTGGAACCATTCCTTCTGAGTTGGGTGAATTCGAGATTCTAACTTCTCTTTCACTTGCTTCAAACCAATTCCAAGGTCCAATACCACAACAGCTAGGGAATTTAAGAGACTTACAAGAACTAGATTTCTCAAATAATTTGATCAATGGTACAATTCCTTCTGCTTTAGGACTACTGGGAAACTTGACTGTTCTTTCACTTGCTTCAAACCAAATTGAAGGTGACATACCTCAAAATCTTGGGGATTTAAGGAGTTTACGAAAACTCTCACTCTCAAAAAATTCACTTTCAGGTTCAATCCCTTTAACTCTATGTCAATTGGGAAATTTATCTTATCTCTACCTTGATTCAAACCAAATAGATGGACAAATACCAACAGAGATAGGGAGTTTAGAAGGACTAATAGTATTAAGTCTTTCATCTAACTCTCTTTTTGGTCCAATTCCTTCTGAATTTGGAAGTTTAATTTCCTTACAGGAGTTATACATGGAGTTCAATCAAATAAATGGTTCTATACCTTCAGAATTTCAGAATTTGGTCAGCCTAAATACCTTACATCTTTCTCACAATAAGATATCCGGTGTTATACCATCTGAACTCTTCAAGTTAGACTTGTCTTCTCTTCATCTTTCAACCAACCAACTAGTTGGGCAGATACCATTTGAGATGAGAAATTCAACAACCCTTTGTGATGTAGATCTTTCCAACAACAAGCTTGAAGGATTTATCCCATCTCCTATAGTAAACTGTTTCCTAGCAAGGGTTAATTTAAGCCATAACCAGCTGAGTGGACACATTCCTGTCCTCATTGGTTTAATCAATATCCTTGATGTTAGTCACAATTTTTTGAGAGGTAAAGTACCTTCTTTACTGGTTAGTAACGATGCTTCTTGGTCAGAAACAGATATAGAACAGATATTATCAAGTTTGGATCTTAGCTACAACCATCTCTCTGGTGTCCTACCCATTAAGCTTGCAAATCTACTTCATATAAACTTGTCATTCAATTTCTTCAAGTGTTCAGAAAGCTTCAAAGTTTTCCATAAAGAATCACTAATTGGTAACGCTCCTCATTTCCCTTGTAATTATTCTCAAGTCCAGAAAACAAAAAATGCCAATCACCTCATTGTAATTATTCTTCCTGTTACTTGCTTCCTCCTTATCATTTGTCTGTCCATATTGTATCTTACTCTGTGTACCAATAAAACCAAAATTGAACAAAGACAAGACAAAAATGGAGACATGTTTTGCATATGGAACTATGATGGTAAAATTGCATTTGAAGACATCATCAAAGCAACACATGACTTTGATATTAGATACTGCATAGGAACTGGTGGTTATGGCAGTGTGTACAGAGCGCAACTTCCAAGTGGCAAAATTGTTGCATTGAAGAAACTTCACCAAAGGGAATCTCAAAATCCTTCTTTTGACAGGAGCTTCCGCAACGAGGTAAAGATGTTATCACAAATCCGTCATAGAAACATTGTCAAGCTTCATGGTTTTTGTCTCCACAATCGGTGCATGTTTTTGGTATATGAATACATGGAAAGAGGAAGCTTATTTTATGCCTTGAGAATAGATGATGAAGCTGAGGAGCTAAGTTGGAGCAAGAGGGTGCATATCATTAGCGGAACGGCGAATGCTTTGGCTTACATGCATCATGATTGTTCGCCACCAATAGTTCACAGAGATGTAACAAGCAGCAACATTTTGTTGCACTCAGAGTTGCATGCTGTTGTCTCAGACTTTGGCACTGCTAGACTCCTTGATCCTGATTCTTCAAATCAGACATTACAAGTTGGAACATATGGATACCTTGCACCAGAGTTGGCCTACACAATGAGAGTGACAGAAAAGTGTGATGTATACAGTTTTGGAGTGGTAGCATTGGAGACATTAATGGGAAGGCATACAAAAGAGCCAATCTTGTCTTTGTTGGACTCTTCTAAAAACAAGAACATAATGGTGAAAGATCTATTGGATTCACGCATCCGTATACCATTATGTCAAAGAGACACTGAAGCAATAGTTGAGGTGGTAAAATTGGCATTGGCATGCTTGCACTCTAATCCAAAGTCAAGACCATCAATGCAGCAAGTGGCTCATCAACTTTCTACTTCTAAACAGTCACTGCCTTTGCCTTTTTCTGAGATTACAGTTCATCAGTTGATAGCTTAA 2568 0.3808 MASTNEERSSLVKSGWWRSDYQNISNHCNWTAITCNEAGSVTDIAAHYWPFNLPPSTMKLQNLNLTAFPSLVTLYLPRMQLTGIIPAEISTLSKLVTLDLSYNHLHGELPRSLSSLTQLKLLDVSFNSLSGTIPSELGEFEILTSLSLASNQFQGPIPQQLGNLRDLQELDFSNNLINGTIPSALGLLGNLTVLSLASNQIEGDIPQNLGDLRSLRKLSLSKNSLSGSIPLTLCQLGNLSYLYLDSNQIDGQIPTEIGSLEGLIVLSLSSNSLFGPIPSEFGSLISLQELYMEFNQINGSIPSEFQNLVSLNTLHLSHNKISGVIPSELFKLDLSSLHLSTNQLVGQIPFEMRNSTTLCDVDLSNNKLEGFIPSPIVNCFLARVNLSHNQLSGHIPVLIGLINILDVSHNFLRGKVPSLLVSNDASWSETDIEQILSSLDLSYNHLSGVLPIKLANLLHINLSFNFFKCSESFKVFHKESLIGNAPHFPCNYSQVQKTKNANHLIVIILPVTCFLLIICLSILYLTLCTNKTKIEQRQDKNGDMFCIWNYDGKIAFEDIIKATHDFDIRYCIGTGGYGSVYRAQLPSGKIVALKKLHQRESQNPSFDRSFRNEVKMLSQIRHRNIVKLHGFCLHNRCMFLVYEYMERGSLFYALRIDDEAEELSWSKRVHIISGTANALAYMHHDCSPPIVHRDVTSSNILLHSELHAVVSDFGTARLLDPDSSNQTLQVGTYGYLAPELAYTMRVTEKCDVYSFGVVALETLMGRHTKEPILSLLDSSKNKNIMVKDLLDSRIRIPLCQRDTEAIVEVVKLALACLHSNPKSRPSMQQVAHQLSTSKQSLPLPFSEITVHQLIA 855
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc181411g00008 855 SUPERFAMILY Protein kinase-like (PK-like) 551 834 IPR011009 -
Stsc181411g00008 855 Gene3D Ribonuclease Inhibitor 354 452 IPR032675 -
Stsc181411g00008 855 FunFam MDIS1-interacting receptor like kinase 2 645 840 - -
Stsc181411g00008 855 ProSiteProfiles Leucine-rich repeat profile. 310 331 IPR001611 GO:0005515
Stsc181411g00008 855 ProSitePatterns Tyrosine protein kinases specific active-site signature. 690 702 IPR008266 GO:0004672|GO:0006468
Stsc181411g00008 855 Gene3D Ribonuclease Inhibitor 157 252 IPR032675 -
Stsc181411g00008 855 Gene3D Transferase(Phosphotransferase) domain 1 645 843 - -
Stsc181411g00008 855 Gene3D Ribonuclease Inhibitor 2 156 IPR032675 -
Stsc181411g00008 855 ProSiteProfiles Protein kinase domain profile. 566 835 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc181411g00008 855 Pfam Protein kinase domain 571 832 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc181411g00008 855 ProSitePatterns Protein kinases ATP-binding region signature. 572 594 IPR017441 GO:0005524
Stsc181411g00008 855 Gene3D Ribonuclease Inhibitor 253 350 IPR032675 -
Stsc181411g00008 855 FunFam Nuclear pore complex protein NUP107 5 159 - -
Stsc181411g00008 855 PANTHER LEUCINE RICH REPEAT KINASE 2 316 843 - -
Stsc181411g00008 855 CDD STKc_IRAK 572 834 - -
Stsc181411g00008 855 Gene3D Phosphorylase Kinase; domain 1 527 644 - -
Stsc181411g00008 855 FunFam Leucine-rich repeat receptor-like protein kinase TDR 185 454 - -
Stsc181411g00008 855 FunFam Leucine-rich repeat receptor protein kinase MSP1 529 644 - -
Stsc181411g00008 855 Pfam Leucine rich repeat 69 129 IPR001611 GO:0005515
Stsc181411g00008 855 Pfam Leucine rich repeat 190 249 IPR001611 GO:0005515
Stsc181411g00008 855 SUPERFAMILY RNI-like 74 459 - -
Stsc181411g00008 855 SMART LRR_typ_2 188 212 IPR003591 -
Stsc181411g00008 855 SMART LRR_typ_2 308 332 IPR003591 -
Stsc181411g00008 855 SMART LRR_typ_2 164 187 IPR003591 -
Stsc181411g00008 855 SMART LRR_typ_2 284 307 IPR003591 -
Stsc181411g00008 855 SMART LRR_typ_2 116 140 IPR003591 -
Stsc181411g00008 855 SMART LRR_typ_2 92 115 IPR003591 -
Stsc181411g00008 855 SMART LRR_typ_2 236 260 IPR003591 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc181411g00008 Stsc-Chr181411 73182 75845 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc181411g00008 68 738 Receptor kinase-like Gene Family AT4G08850 37.466 4.88e-140 439
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Stsc181411g00008 Pkinase 3.2e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc181411g00008 - - aprc:113851126 853.973