Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc181411g00005 ATGAGTCAGTTAGAGAACTTGACCCACCTATTTCTTGATTCAAATCAAATTGAAGGTCCTATACCAAAAGACCTATGCAATCTAAAGCATTTGGAGATATTGAATCTCTCAAATAATCTCCTCACAGGTCCAATCCCTTCTGAAATAGGATGTTTAGTTTCTTTGCAAGTGTTGAACATAGAGAACAACCTAATAAATGGTTCAATACCACCACAACTTTTTCAGTTGGAGAAGATGTCTTCCTTGGACCTCTCATCAAACAAATTGAGTGGCTCACTTCCATCAAGTATTGCCAAAGCCATTAGCCTCTCATACATAGACCTCTCTCACAACAACTTGAAAGGTCCTATCCCAACTCTTTTCCCATATTGTGCTTTCAATGCAACAATAGATTTGAACCACAACATGTTAAATGGTAGCATTACTTTCAAAATTGGTTGTGTTACCAATGTTGACCTTAGCCATAATTTTTTCAGTGGTGAGGTTCCTTCTGTTCATGGATTAGCTTCACAGTTACAGAGTTTGGATCTTAGTTACAATAATTTCACAGGCAAATTAAACAAGGAACTTGCTGCTCTAAGGTTTGTTAACCTGTCATACAATTCCTTTGATCATGACAAGCTGCTAGATTATTGTTCTTTTCCGAAAGACTCGTTGATCGGTTGCGGCTCTCTAGATTTCGCATCTTGCCACTCTGATGTCCAACAAAGAAATCCACCATCATCATCAAACAAAGCAAAGCACACAATTGTAATTTCTCTTTCCATCATTGGATTCATTCTCTTAGTGTTTCTTGCCACATCGTGTGTTACTAAACATGTGATGGCTAAGAGAAAAGTTGAAAGAGTTTCTACCAAGAATGGAGACTTGTTCTCTATATGGAACTATGATGGAAAAATTGCATTTGAGGACATAATTGAAGCAACACAAGACTTTGATATCAGGTACTGCATTGGAACCGGTGCATATGGCAGTGTCTACCAAGCAAAATTGCCAAGTGGTAGGACTGTTGCATTGAAGAAACTTCATCAGAAGGAATCTCAGAACCCTTCATTTGACAAGAGCTTCCGAAACGAGTTTATGGTGTTATCAAGAATCCGGCATAGAAACATTGTGAAGCTTTATGGCTATTGCCTCCACAACAGGTACATGTTTCTGATCTATGAATACATGGAAAGAGGAAGCTTGTTTTGTGTGTTGCACAATGATATGGAAGCTAAGGAGTTGAATTGGAGAAAGAGAATGAATATCATTAAAGGAATAGCAAATGCTTTGTCTTACATGCATCATGATTGCAAGCCACCAATTGTTCATAGAGATGTAACATGTAACAATGTTTTGTTGAACCCACACTTGGAGGCTTTTGTTTCCGACTTTGGCACTGCTAGACTTCTTGATCCCGATTCTTCAAATCAAACGCTACTAGTTGGTACTCGCGGTTATATTGCCCCAGAGCTTGCATACACTTTGAGTGTAACCGAAAAATGCGATGTTTATAGTTTTGGAGTGGTGGTGTTGGAGACATTGATGGGAAGGCACCCTGAAGAGATACTATCATCTTTATCAAGTTCTTGTGTTCAAAACTTGTTGTTGAAGGATCTCTTGGACTCTCGCCTTAGACTTCCTATGCTTCAAAGAGATGCAAAAGAGATAGTTTTGGTGGCAAAAATAGCATTGGCATGCTTGAATTCCAATCCGAAGTTTAGACCATCAATGCAAGAAGTGGCTCAAGAGGTCTCTGGTTCCAAACTACCATTGTCTGTATCTTTCTTTGAAGTTTCTATTCACCAATTGATGGCTCAACAAGAGATGCATCTTCCTTCATCTTGTGATTTGTAA 1839 0.3872 MSQLENLTHLFLDSNQIEGPIPKDLCNLKHLEILNLSNNLLTGPIPSEIGCLVSLQVLNIENNLINGSIPPQLFQLEKMSSLDLSSNKLSGSLPSSIAKAISLSYIDLSHNNLKGPIPTLFPYCAFNATIDLNHNMLNGSITFKIGCVTNVDLSHNFFSGEVPSVHGLASQLQSLDLSYNNFTGKLNKELAALRFVNLSYNSFDHDKLLDYCSFPKDSLIGCGSLDFASCHSDVQQRNPPSSSNKAKHTIVISLSIIGFILLVFLATSCVTKHVMAKRKVERVSTKNGDLFSIWNYDGKIAFEDIIEATQDFDIRYCIGTGAYGSVYQAKLPSGRTVALKKLHQKESQNPSFDKSFRNEFMVLSRIRHRNIVKLYGYCLHNRYMFLIYEYMERGSLFCVLHNDMEAKELNWRKRMNIIKGIANALSYMHHDCKPPIVHRDVTCNNVLLNPHLEAFVSDFGTARLLDPDSSNQTLLVGTRGYIAPELAYTLSVTEKCDVYSFGVVVLETLMGRHPEEILSSLSSSCVQNLLLKDLLDSRLRLPMLQRDAKEIVLVAKIALACLNSNPKFRPSMQEVAQEVSGSKLPLSVSFFEVSIHQLMAQQEMHLPSSCDL 612
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc181411g00005 612 Pfam Leucine rich repeat 6 65 IPR001611 GO:0005515
Stsc181411g00005 612 SUPERFAMILY L domain-like 3 206 - -
Stsc181411g00005 612 SMART LRR_typ_2 28 51 IPR003591 -
Stsc181411g00005 612 SMART LRR_typ_2 4 27 IPR003591 -
Stsc181411g00005 612 SMART LRR_typ_2 52 76 IPR003591 -
Stsc181411g00005 612 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 1 93 - -
Stsc181411g00005 612 PANTHER LEUCINE RICH REPEAT KINASE 2 54 586 - -
Stsc181411g00005 612 FunFam Leucine-rich repeat receptor protein kinase MSP1 275 390 - -
Stsc181411g00005 612 Gene3D Transferase(Phosphotransferase) domain 1 391 586 - -
Stsc181411g00005 612 SUPERFAMILY Protein kinase-like (PK-like) 297 577 IPR011009 -
Stsc181411g00005 612 ProSitePatterns Protein kinases ATP-binding region signature. 318 340 IPR017441 GO:0005524
Stsc181411g00005 612 Pfam Leucine Rich Repeat 171 191 IPR001611 GO:0005515
Stsc181411g00005 612 FunFam MDIS1-interacting receptor like kinase 2 391 584 - -
Stsc181411g00005 612 Gene3D Ribonuclease Inhibitor 1 223 IPR032675 -
Stsc181411g00005 612 Pfam Protein kinase domain 317 577 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc181411g00005 612 ProSiteProfiles Protein kinase domain profile. 312 591 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc181411g00005 612 ProSitePatterns Tyrosine protein kinases specific active-site signature. 436 448 IPR008266 GO:0004672|GO:0006468
Stsc181411g00005 612 Gene3D Phosphorylase Kinase; domain 1 270 390 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc181411g00005 Stsc-Chr181411 31671 33628 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc181411g00005 1 98 Receptor kinase-like Gene Family AT4G08850 32.653 6.50e-09 57.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Stsc181411g00005 Pkinase 7.8e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc181411g00005 - - gmx:100789677 716.072