LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Stsc181411g00001	ATGGCACAAATTGCACCATCAACTTCATCATCTTCATTCCGCTACAACTATACTTATGATGTTTTCCTAAGTTTCAGAGGTCAAGATACAAGAAAAGGCTTCACCGGAAGCCTCTACAATGCACTGCATCAAAGGGGAATCCACACCTTCATTGATGATGAGGGTCTCAAAGCAGGGGAAGAGATAACCCCATCACTTCTAAATGCCATTGATGATTCTAGGATTGCCATTGTTGTGTTCTCAAGGGATTATGCATCCTCGAGTTTTTGTCTCAAGGAACTTGTGAAGATCCTTGATTGTGTTGATTCAAAGGGTCGACTAGTTTTGCCCGTTTTCTATGATGTGGATCCTTCTGATGTGAGATATCAAAAGGGTAGCTATGGAGTAGCTTTGGCTAAGCTTGAAAAGAGGCAGAATGTGGAAGAATGGAGAAAAGCTTTGACTAAAGCTGCAAACTTGTCTGGTTGGCATTTCAAACCAGGGCCTGACTCTGAATACGAATATGTGTTTATCAACAAGATTGTTGAGGAAGTCTCTGATAAGCTCAAACGAGGTCCTCTACATATTGCTGATTACCCTGTTGGGCTACAACCTCGGGTTCAAGAACTAACTAAACTTCTACGCATTGGGGTTGATAATGACAAGGTCAAGATGGTTGGCATTCATGGGATCGGTGGAATAGGCATAACAACAATTGCAAGTGCTTTATATAACTCCATTGCTGATCGATTTGAAGCTTCGTGCTTCCTATCTAATGTTAGAGAAAAATCAAGCAAGAATGGTTTGGTATCACTCCAAGAGACACTACTACTTGAATTGCTTGGGGAGGAAGTTAAGTTGGGAGGTGTGAATCAAGGAATTCCAATTATAAAAAGGAGGCTCAGCCAAAAGAAAGTGTTGCTGTGTCTTGATGATGTTGACAGCTTGCAGCAGTTACAAGCTCTAGCCGGAGGGAGCGATTGGTTTGGTTCCGGTAGCAGAGTCATTATAACAACAAGGGATAAACATTTGCTACTTTCACATACAGATGTGAAAGTAAAATCATATAGGGTCAAGGAGTTAAATAATGGAGAAGCTCTTGAACTGTTAAGATGGCATGCTTTTAAAGGAGAGGAAGTCGATCCGAGTTATGCAGATCTTTTGAGTCGTGTGATACGCTATGCGAATGGGCTTCCATTCGTCTTGATAGTAATTGGTTCAAACTTGTCAGGGAAAAGCCTTGATGAATGGAATTCAGCATTGGAAAATTATGAAAAAAGACCAAACAGAAGTGTTCAGGAAATGCTTACTGTCATCTATGAAGGTTTGGAGGATATCCAGAAGGAAATTTTCCTTGACATTGCATGTTTCTTTGTTGGTGAGAAGCTGGAATATGTGAACAACATGTTGCTGCACGGCCGCGGCTTCAACCCCGAGTATGGAATTGGTGTTTTGATTCAGAAATCTCTCTTAATGGACAAATATGGTCATGCATCAATGCATGACTTGATAACAGAAATGGGGAGAGAGATTGTGAGGAAAGAATCAGAGGTAGAGCCTGGCAATCGCAGTAGGCTATGGTTCTATGAAGACATTATTCACGTTTTAGAAGAAGACATGGGATCTGAGAAAACCGAAATCATGATCATTGATTTGCCTGAAGATGAAGAAGTGTTTTGGACAGGAGAAGAATTTAAGAAGATGAAAAACCTCAAAATACTCAAAGTCATAAATGCAAGGTTCTCTACAACTCCCAAATATCTCCCAAATTCCTTAAGAGTGCTCGATTGGGAACGATATCCATCACCATGCTTACCACCAGATTTTCGTCCACGGAAACTCAGTATGCTCAACTTGCCTAACAGCTCCCTCAAGTTGGATAATCCCCTGAAGAACTTTAAGAGTTTGAGTCACGTGAATTTTGAAGGCTGTGAATCATTGGTACAACTACCTGACCTATCTGGAGTCCCAAATTTGACAGAACTCTGCCTTGATGATTGCATAAATTTGAACAAAGTCCATGATTCAATTGGATTTCTTCATAAACTCAGGAATTTGAGTGCTAAAGGATGCACTAAGCTCGGCTTATTTCCTCCTAGTATCAACTTGACATCCCTTGAAACTTTCTCATTGTGGGGGTGCTCAAGTCTTACAAACTTTCCAGAAATTTTAGGAAAGATGGAATATCTAGAAGATGTTGATTTGGGATCAACTGCGATTAAGGCGCTTCCGCATTCGATACAAAATCTGGTTGGCCTTAGACGGCTCGACTTGATCAGTTGCAACAGGCTTAATCAATTGCCCAGTAGCATTTTCTTGTTGCCGAAACTCGAGTCACTGGAAGCTGAATCATGTAAAGGGTGTCAGATTTTAACCAATTATGAACGACAAGAAAATATGGACATCATAGTCTCTTCAAAAGTGAAGGATCTTCACCTTAGAGATTGCAATGTATCCGATGAATTTCTTCCTATTTATTTCACTTGCTTTCCCAACATAGAAATGTTACATTTGGGCTCAAATGACTTCACAACCCTTCCTTCCTGCATCAAAGACTGTCACTTTCTGACGAGCATATACTTGGATGACTGCAAGCTACTTCAACACATCACATCACTTCCACCAAACATCAAAACTTTATCAGCAAGGAACTGCATATCCTTGACTTCACACTCTACAAGCATGTTATTGAGTCAGGAAATACATGAAGTTGGGGGGACACACTTTATGTTTCCGGGAACAAAAATTCCAGATTGGTTTGACCAACACAAGGAGGGAGCATCAGTATCTTTCTGGTTTCGAAAGAAATTCCCGGAAATAGCGCTTTGTTTTGTTTTCGGAGGCTTGGACAAGGAGCCTAGGAAATTCGAGGTCAAGTTCTATGTGTTCATCAATGGCAAACCACCATTCTATTCCAATGAGGGTGGCAATACCTTCAGAATGCTGACGGATCACGTGTTCCTATTCGATCTGCAGAAGGTAGTGGAGCTTCCTTCTTACCAATTTGACCAGGTAGTTTTAGAAGACGAATGGAATCATGTTGAGATTCATTGTTTGGATAGTCCAACAGTGTTAGAATCATCCCTTGATATGGCCATTGTGAAATGGGGTGGTGTTCATGTGTTCAACAAGCAGGGAAATCACATGGATGATGTCTCATTTTCAAATCCTCAAAACAGAACATATGATTTGGCAGCTCGCTATCCGTGGATCAAGAACCAGCATGCACTCACATGA	3216	0.4095	MAQIAPSTSSSSFRYNYTYDVFLSFRGQDTRKGFTGSLYNALHQRGIHTFIDDEGLKAGEEITPSLLNAIDDSRIAIVVFSRDYASSSFCLKELVKILDCVDSKGRLVLPVFYDVDPSDVRYQKGSYGVALAKLEKRQNVEEWRKALTKAANLSGWHFKPGPDSEYEYVFINKIVEEVSDKLKRGPLHIADYPVGLQPRVQELTKLLRIGVDNDKVKMVGIHGIGGIGITTIASALYNSIADRFEASCFLSNVREKSSKNGLVSLQETLLLELLGEEVKLGGVNQGIPIIKRRLSQKKVLLCLDDVDSLQQLQALAGGSDWFGSGSRVIITTRDKHLLLSHTDVKVKSYRVKELNNGEALELLRWHAFKGEEVDPSYADLLSRVIRYANGLPFVLIVIGSNLSGKSLDEWNSALENYEKRPNRSVQEMLTVIYEGLEDIQKEIFLDIACFFVGEKLEYVNNMLLHGRGFNPEYGIGVLIQKSLLMDKYGHASMHDLITEMGREIVRKESEVEPGNRSRLWFYEDIIHVLEEDMGSEKTEIMIIDLPEDEEVFWTGEEFKKMKNLKILKVINARFSTTPKYLPNSLRVLDWERYPSPCLPPDFRPRKLSMLNLPNSSLKLDNPLKNFKSLSHVNFEGCESLVQLPDLSGVPNLTELCLDDCINLNKVHDSIGFLHKLRNLSAKGCTKLGLFPPSINLTSLETFSLWGCSSLTNFPEILGKMEYLEDVDLGSTAIKALPHSIQNLVGLRRLDLISCNRLNQLPSSIFLLPKLESLEAESCKGCQILTNYERQENMDIIVSSKVKDLHLRDCNVSDEFLPIYFTCFPNIEMLHLGSNDFTTLPSCIKDCHFLTSIYLDDCKLLQHITSLPPNIKTLSARNCISLTSHSTSMLLSQEIHEVGGTHFMFPGTKIPDWFDQHKEGASVSFWFRKKFPEIALCFVFGGLDKEPRKFEVKFYVFINGKPPFYSNEGGNTFRMLTDHVFLFDLQKVVELPSYQFDQVVLEDEWNHVEIHCLDSPTVLESSLDMAIVKWGGVHVFNKQGNHMDDVSFSNPQNRTYDLAARYPWIKNQHALT	1071

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Stsc181411g00001	1071	SUPERFAMILY	Toll/Interleukin receptor TIR domain	8	156	IPR035897	-
	Stsc181411g00001	1071	Pfam	TIR domain	19	184	IPR000157	GO:0007165
	Stsc181411g00001	1071	Gene3D	-	185	346	IPR027417	-
	Stsc181411g00001	1071	PRINTS	Disease resistance protein signature	293	307	-	-
	Stsc181411g00001	1071	PRINTS	Disease resistance protein signature	218	233	-	-
	Stsc181411g00001	1071	PRINTS	Disease resistance protein signature	741	757	-	-
	Stsc181411g00001	1071	PRINTS	Disease resistance protein signature	388	402	-	-
	Stsc181411g00001	1071	Gene3D	Ribonuclease Inhibitor	544	707	IPR032675	-
	Stsc181411g00001	1071	SUPERFAMILY	"Winged helix" DNA-binding domain	425	530	IPR036390	-
	Stsc181411g00001	1071	Gene3D	Ribonuclease Inhibitor	708	897	IPR032675	-
	Stsc181411g00001	1071	SMART	till_3	18	153	IPR000157	GO:0007165
	Stsc181411g00001	1071	Gene3D	-	13	184	IPR035897	-
	Stsc181411g00001	1071	PANTHER	LEUCINE-RICH REPEAT-CONTAINING PROTEIN	19	762	IPR044974	GO:0006952
	Stsc181411g00001	1071	Pfam	NB-ARC domain	212	429	IPR002182	GO:0043531
	Stsc181411g00001	1071	Gene3D	-	353	443	IPR042197	-
	Stsc181411g00001	1071	FunFam	Disease resistance protein (TIR-NBS-LRR class)	15	184	-	-
	Stsc181411g00001	1071	SUPERFAMILY	L domain-like	538	898	-	-
	Stsc181411g00001	1071	SUPERFAMILY	P-loop containing nucleoside triphosphate hydrolases	180	447	IPR027417	-
	Stsc181411g00001	1071	ProSiteProfiles	TIR domain profile.	17	182	IPR000157	GO:0007165

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Stsc181411g00001	Stsc-Chr181411	6324	10883	Dispersed/Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Stsc181411g00001	13	778	WRKY Transcription Factor Family	AT4G12020	31.021	3.89e-81	289

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Stsc181411g00001	-		-	adu:107475516	1868.59