Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc181410g00013 ATGCCGGGAACGGAAGTTGCAGTTGCTCCCAAAAGGCGCAATAGAATATTGGATTCAGCAGGAGATTCACCTCTAAACTCCTGTCATAAGGAACAAACTGCTAAGATGCTTCTCCGTATACAAGATCCAGGGGTATTATGTCATACCAGAACTGATGTCAAAGGTGTTGAGCTTCATATAGGGCTCACTTCAGTTGCTTTTGTTCACCCAGAAACAGCCAAGCAGTTCTCATTTGACATGCTTCAGCCAGTTTCCTTAGTGCCAAAAATATCCAAGGAGAATGCTAATATTTCCAAAACAAATGTTTTGAAATCCAAAGGCGGGTCAACTGGCAATGAAATTGAGAATGGAAATTTAACTGACAAGAAACAACATCGACAAGCAGTTGTTCATCTATTATTTTCAGAATCTGTGGCTGCAGGGCATGTGATGCTAGCCAAGTCTCTTCGACTATATTTGAGAGCCAGCCTGCATACATGGGTTTATTTGAAAGCATATGATGTCATTATGGAGAAAAGTATTCCATCCATCACTTTTTCTCCTTGCCAATTCAAAGTATTAAGGCCAGATAGTTCTTCTGAGAAAGATGGTCTAGATGGCCACAATAATCACATAAATGGAAAATTGCTTGCAAAATCTATGTCAGGTGACTTTGTGGACACTATAGATTGGTCGATTAACAATGAAGTTGTTGCAGCTCTTTCTGATGAATCCAACTGCAAGGCAGACGAGGCGACTGCAAATCAGTCTCAGAATCAAAAGGGAATAAAGAGTCTTGTTCGACTGTGGTATATTGCTCAACTTGAGGCAATTTCTTCTATTACGGGTATAGAGGTTAATTCATTGGTCATGTGTAGCCAAACCTTGCTTGATTTCAAATTAAGCTGTTACAACCTTGGGGATAATGGGAGAGCTCCCCTACCTCATAATTCTTCAGAGAACAGTGGCAAGACAGCTGAAGTGTTATTTATTTTGACTTTGGGTGATGAACATCTGCATCATGGGAAACCTAATGCATATGAAGTTGCTCTTGGTAAAAGCCTCAAAAGTATCAATGTAGGTGATCTGCAGCTTTTTGAAGGGATGAAATTGGGTGATCCCATTTCTATTCATTCCATCGAAGAGACAGCATCTCAAGAGCACATTAGTTCAAATGTATCTTTACTTAGCTGGATGGAGAAACCAGCTTCTGATATTATTAATAGGATGTTGGTATTGTTGTCTTCGGAGTCTGGTCTGTGGTTTGGTTCATGCAACTTGCCACTCCCTGGACATGTTTTAGTACACGGACCACCAGGCTCTGGGAAAACTTCATTGTCAAGGGCTGTAGCCAAATCCCTGGAGAATCATAAAGATATCTTAGCACACATAGTTTTTGTGCCCTGCTCAAAACTTTCTTTGGAGAAGGTTCCAATAATTCGCCAAGAACTTACGAACCATGTGGCGGAAGCTGTAGACCATGCGCCCTCCATTGTAATATTTGATGATCTTGATAGCATAATTTCAACTTCTGATTCTGAATTATCTCAGCCCTCAATGTCTGTTACTGGACTCACAGATATTTTGGTTAACATCATCGATGAATATGGGGAGAAGAGGCGCAAATCATGTGGATTTGGACCAGTAGCCTTCATAGCTTCCATACAATCACTGGAGAAACTACCGCAGTCTTTGAGTTCTTCAGGACGCTTTGACTTCCACATACAATTGCCAGCTCCTGCAGCTTCAGAGCGTAAAGCTATGTTGAAGCATGAAATTGAAAGGCGTCACTTGCAATGTGGTGATGACATCCTGCTCGATGTGGCTGTCAAATGTGACGGTTATGATGGTTATGATCTGGAAACATTAGTTGACAGAGCTGTCCATGCTGCTGTTCGTCGATTTTTGCCATCAAATGCTGTCAATTTTGAGCACGAGAGTCCAGCTTTACTAAGAGAGGATTTCTCCCAGGCAATGCACGATTTTCTTCCAGTTGCAATGCGTGATATCACAAAATCTGCATCTGATGATGGTCGTTCTGGGTGGGATGATGTGGGTGGTCTTGTTGACATCCGAAATGCTATTAAGGAGATGATAGAGTTGCCATCAAAGTTTCCAAAAACTTTTGCAAAAGCACCGTTGAGGTTGAGATCAAATGTCCTTTTATATGGTCCTCCTGGTTGTGGCAAAACTCACATAGTTGGTGCTGCTGCAGCTGCTTCATCGCTTCGATTCATATCAGTGAAAGGACCAGAGCTGTTGAACAAGTATATTGGTGCTTCTGAACAAGCTGTTAGGGATATATTTGCTAAAGCAGCAGCAGCAGCTCCTTGCTTACTATTTTTTGATGAGTTTGATTCTATTGCTCCTAAGAGAGGGCATGACAATACTGGAGTAACTGATCGTGTCGTTAATCAATTTCTGACTGAGTTAGATGGTGTTGAAATTTTAACCGGCGTATTTGTATTTGCTGCAACAAGTAGACCAGATTTACTGGACGCAGCACTGCTGAGACCTGGCAGGTTAGATCGACTTCTTTTCTGCGATTTTCCATCTTGGCATGAGAGATTGGAAATTCTGACTGTTCTTTCTAGAAAGTTACCAATGGCACATGATATAGATTTGACTGCAGTAGCTAAAATTACTGAAGGATTCAGTGGAGCTGACCTCCAAGCTCTCCTCTCAGACGCACAGCTTGCAGCAGTCCATGAAGTTCTGGACAATTTGGATGCCTCTGCAGCAGATAAAGCACCAGTTATTACAGATGCTCTACTGAAGGCCACTGCCTCGAAGGCAAGACCATCTGTTTCAGAAGAAGAGAAAAGAAGACTCTACAGTATCTATGGCCAGTTCCTGGATTCAAAAAAATCTGTTGCTGCTCAGTCAAGGGATGCCAAAGGCAAGAGAGCAACTCTAGCATGA 2901 0.4202 MPGTEVAVAPKRRNRILDSAGDSPLNSCHKEQTAKMLLRIQDPGVLCHTRTDVKGVELHIGLTSVAFVHPETAKQFSFDMLQPVSLVPKISKENANISKTNVLKSKGGSTGNEIENGNLTDKKQHRQAVVHLLFSESVAAGHVMLAKSLRLYLRASLHTWVYLKAYDVIMEKSIPSITFSPCQFKVLRPDSSSEKDGLDGHNNHINGKLLAKSMSGDFVDTIDWSINNEVVAALSDESNCKADEATANQSQNQKGIKSLVRLWYIAQLEAISSITGIEVNSLVMCSQTLLDFKLSCYNLGDNGRAPLPHNSSENSGKTAEVLFILTLGDEHLHHGKPNAYEVALGKSLKSINVGDLQLFEGMKLGDPISIHSIEETASQEHISSNVSLLSWMEKPASDIINRMLVLLSSESGLWFGSCNLPLPGHVLVHGPPGSGKTSLSRAVAKSLENHKDILAHIVFVPCSKLSLEKVPIIRQELTNHVAEAVDHAPSIVIFDDLDSIISTSDSELSQPSMSVTGLTDILVNIIDEYGEKRRKSCGFGPVAFIASIQSLEKLPQSLSSSGRFDFHIQLPAPAASERKAMLKHEIERRHLQCGDDILLDVAVKCDGYDGYDLETLVDRAVHAAVRRFLPSNAVNFEHESPALLREDFSQAMHDFLPVAMRDITKSASDDGRSGWDDVGGLVDIRNAIKEMIELPSKFPKTFAKAPLRLRSNVLLYGPPGCGKTHIVGAAAAASSLRFISVKGPELLNKYIGASEQAVRDIFAKAAAAAPCLLFFDEFDSIAPKRGHDNTGVTDRVVNQFLTELDGVEILTGVFVFAATSRPDLLDAALLRPGRLDRLLFCDFPSWHERLEILTVLSRKLPMAHDIDLTAVAKITEGFSGADLQALLSDAQLAAVHEVLDNLDASAADKAPVITDALLKATASKARPSVSEEEKRRLYSIYGQFLDSKKSVAAQSRDAKGKRATLA 966
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc181410g00013 966 Gene3D - 374 573 IPR027417 -
Stsc181410g00013 966 ProSitePatterns AAA-protein family signature. 813 831 IPR003960 GO:0005524|GO:0016887
Stsc181410g00013 966 FunFam PeRoXisome assembly factor 844 922 - -
Stsc181410g00013 966 FunFam Peroxisome biogenesis protein 1 379 573 - -
Stsc181410g00013 966 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 407 652 IPR027417 -
Stsc181410g00013 966 Gene3D - 674 936 IPR027417 -
Stsc181410g00013 966 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 675 935 IPR027417 -
Stsc181410g00013 966 Gene3D - 574 667 - -
Stsc181410g00013 966 PANTHER AAA-FAMILY ATPASE 112 940 - -
Stsc181410g00013 966 SMART AAA_5 422 574 IPR003593 GO:0016887
Stsc181410g00013 966 SMART AAA_5 709 845 IPR003593 GO:0016887
Stsc181410g00013 966 FunFam Nuclear valosin-containing protein-like 671 849 - -
Stsc181410g00013 966 Pfam ATPase family associated with various cellular activities (AAA) 713 840 IPR003959 GO:0005524|GO:0016887
Stsc181410g00013 966 Pfam ATPase family associated with various cellular activities (AAA) 426 571 IPR003959 GO:0005524|GO:0016887
Stsc181410g00013 966 Pfam AAA+ lid domain 865 901 IPR041569 -
Stsc181410g00013 966 Gene3D - 844 923 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc181410g00013 Stsc-Chr181410 72847 79560 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc181410g00013 707 912 Calmodulin-binding Proteins AT3G56690 38.571 2.76e-37 149
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc181410g00013 K13338 - gmx:100803882 1481.08