Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc181410g00011 ATGTCAAGCTCAAGAGTGGACTTCATTGCAAGTAGTTCTGGATTTGTAGAGAAAGCCCCATTGCCTTCAACAAATTTGCAGGGGGATGATGATGAGATTCAACCACTTTCAGGATGCCCTTTCTATCATGTGATCCTTTCTAAGTCACATCTTAATCCTCGCTATCAAATGGCGCTTTCGAACACCTTGCCACTTCCGGCTGCCGAACTCCCGGCTATTCTCAACTATGGAAGCAAGAGCTGGCACATGCGGTATTGCGGACTAGGCAAAAGTTCCAACAGGTTCTTTAACAATAAAGGCTGGAAAAAATTTGCTGTTGAGAATGGTTTGAAGGATGGGGACGCTTGTGTGTTTGAACTCAAGGAGAACAGTGAAGAGAAACTTGTCTTCCAGGTTCAAATTCTCAGAGGTGACATCCCTGAAGCCCTTCTTGGAAGGAAAGAGAAAGAGCAGAAAAAGACCATGGCTAAGGTTGCAGAAAAGCCAGGAGGTAAAAGTGCAGAAAACAACCAAACTGGGGAGAGTGCAGAAATGGCAATTCTCATTGACTAG 552 0.4475 MSSSRVDFIASSSGFVEKAPLPSTNLQGDDDEIQPLSGCPFYHVILSKSHLNPRYQMALSNTLPLPAAELPAILNYGSKSWHMRYCGLGKSSNRFFNNKGWKKFAVENGLKDGDACVFELKENSEEKLVFQVQILRGDIPEALLGRKEKEQKKTMAKVAEKPGGKSAENNQTGESAEMAILID 183
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc181410g00011 183 ProSiteProfiles B3 DNA-binding domain profile. 73 138 IPR003340 GO:0003677
Stsc181410g00011 183 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS11G0197600-RELATED 39 140 IPR044837 -
Stsc181410g00011 183 SUPERFAMILY DNA-binding pseudobarrel domain 38 136 IPR015300 -
Stsc181410g00011 183 Gene3D - 29 138 IPR015300 -
Stsc181410g00011 183 CDD B3_DNA 40 136 IPR003340 GO:0003677
Stsc181410g00011 183 MobiDBLite consensus disorder prediction 150 183 - -
Stsc181410g00011 183 Pfam B3 DNA binding domain 74 132 IPR003340 GO:0003677
Stsc181410g00011 183 SMART B3_2 42 138 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc181410g00011 Stsc-Chr181410 64242 65989 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc181410g00011 45 138 REM Transcription Factor Family AT4G33280 28.723 1.26e-07 48.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Stsc181410g00011 B3 4e-14 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc181410g00011 - - adu:107484003 244.202