Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc181410g00010 ATGCTTGGTGGCCTCTACGGCGACCTTCCTCCGCCCTCTTCGGCGGAGGAAGACAAACCCACCACCAACTCCACCGTCTGGTCCACCAGCACCAAGATGGCCCCCGCCACCCTCCGCAAACCCGCCACCGTCTCCGCCTCTCCCGTCACCCTCCTCCGATCCCAATCCAAACCCAAACCCGTCCCCACTCCCTCCTCCATCTCCAAAACCCCCTCAATTCCTGCCGCTCCGGCGCTTCCACCGCCTCCGGTTCTCCCCGACGACTCAGCGCACCACCAACCTGCACTCGTCGGCGTCCAATCGACGGTGATCGAGGAGTACGACCCCGCCCGGCCCAACGACTACGAGGAGTACCGCCGCGAGCGGAAGCGAAAGGCGAGGGAGGCGGAGATGATGCGTGAGCTGGAGCGGCGGCGCCAGGAGGAGGAGGAGAGAGAGAAGAGAGAGAGGGAGGAGAGAGAAAGAGAGAGGGAGCGGGAGCGGGAGCGGGATTACGGCGATTCAAGGTTGAATATTTCCGGCGAGGAAGCTTGGAGGAGGCGTGCTGCAATGAGCAGTGGAGGTGGCAGCGGTGGCGGTAGCGGCACTGTGCCTCGATCGCCGTCGCCACCAGGGAATTCAGATGGTTTTAGCATTGGGAAGTCGGAGACTGGCGGGTTGGGGCTTGGTGCCGGCGGGCAGATGACGGCGGCGCAGAGGATGATGGCGAAGATGGGATGGAAGGAAGGGCAGGGGCTTGGGAAGCAAGAACAAGGGATCACTACTCCATTGATGGCAAGGAAGACTGATAGAAGAGCTGGTGTTATTGTGAATGCCAGTGAGAACAGTAATAATAAGCCTGAGAAGAAGGTGAAGAGTGTTAACTTCAATGGGGTGCCTACTAGGGTGCTCCTACTTAGGAACATGGTGGGTCCTGGTGAGGTAGATGATGAACTGGAAGAGGAAGTAGGATCAGAATGTGCCAAGTATGGAACTGTAACTCGGGTTTTGATATTCGAGATAACAGAGCCAAATTTCCCTACTGATGAAGCAGTAAGAATTTTCGTGCAATTTGAGAGACCAGAGGAAACAACCAAAGCATTAATTGACCTTGATGGTCGGTACTTTGGAGGTCGAGTGGTACGTGCCTCATTTTACGACGAGGAGAAGTTCGGCAAGAATGAGCTAGCTCCAATGCCAGGAGAAATTCCTGGTTTTTCCTGA 1203 0.5669 MLGGLYGDLPPPSSAEEDKPTTNSTVWSTSTKMAPATLRKPATVSASPVTLLRSQSKPKPVPTPSSISKTPSIPAAPALPPPPVLPDDSAHHQPALVGVQSTVIEEYDPARPNDYEEYRRERKRKAREAEMMRELERRRQEEEEREKREREERERERERERERDYGDSRLNISGEEAWRRRAAMSSGGGSGGGSGTVPRSPSPPGNSDGFSIGKSETGGLGLGAGGQMTAAQRMMAKMGWKEGQGLGKQEQGITTPLMARKTDRRAGVIVNASENSNNKPEKKVKSVNFNGVPTRVLLLRNMVGPGEVDDELEEEVGSECAKYGTVTRVLIFEITEPNFPTDEAVRIFVQFERPEETTKALIDLDGRYFGGRVVRASFYDEEKFGKNELAPMPGEIPGFS 400
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc181410g00010 400 ProSiteProfiles G-patch domain profile. 227 273 IPR000467 GO:0003676
Stsc181410g00010 400 PIRSF SPF45 3 396 IPR040052 GO:0045292
Stsc181410g00010 400 SMART G-patch_5 225 271 IPR000467 GO:0003676
Stsc181410g00010 400 SMART rrm2_1 296 377 IPR003954 GO:0003676
Stsc181410g00010 400 MobiDBLite consensus disorder prediction 16 36 - -
Stsc181410g00010 400 Pfam G-patch domain 230 269 IPR000467 GO:0003676
Stsc181410g00010 400 MobiDBLite consensus disorder prediction 43 72 - -
Stsc181410g00010 400 FunFam Putative splicing factor 45 294 380 - -
Stsc181410g00010 400 MobiDBLite consensus disorder prediction 74 88 - -
Stsc181410g00010 400 SUPERFAMILY RNA-binding domain, RBD 297 383 IPR035979 GO:0003676
Stsc181410g00010 400 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 295 381 IPR000504 GO:0003723
Stsc181410g00010 400 MobiDBLite consensus disorder prediction 189 213 - -
Stsc181410g00010 400 Gene3D - 294 380 IPR012677 -
Stsc181410g00010 400 PANTHER SPLICING FACTOR 45 SPF45 1 391 IPR040052 GO:0045292
Stsc181410g00010 400 MobiDBLite consensus disorder prediction 109 176 - -
Stsc181410g00010 400 CDD RRM_UHM_SPF45 293 389 IPR034653 -
Stsc181410g00010 400 Coils Coil 115 163 - -
Stsc181410g00010 400 MobiDBLite consensus disorder prediction 1 227 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc181410g00010 Stsc-Chr181410 60894 63660 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc181410g00010 233 268 C2H2 Transcription Factor Family AT5G26610 61.111 1.14e-06 48.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc181410g00010 K12840 - tcc:18595036 473.781