Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc181409g00006 ATGACAGGTTCTGGATCTCCTTGTGGTGCTTGCAAGTTCTTGAGGAGAAAATGTGTGAGAGGATGTGTTTTTGCACCTTACTTCTGCCATGAACAAGGAGCTACTCATTTTGCAGCCATTCACAAAGTGTTTGGTGCAAGCAATGTCTCAAAGCTCCTTGCCCATCTTCCGGTGAGCGATCGCTGCGAAGCTGCAGTCACGATCTCGTATGAAGCTCAGGCAAGGCTTCAAGACCCCATCTATGGCTGTGTCTCTCATATCTTTGCCCTTCAACAACAGGTGGTGAATTTACAAGCACAGCTAGCATATCTGAAGGAACAAGCAGCACAACAAAGTTGTGTGAATGGTGGAAACCCTAATCATGAGAGATACTTTGATAAACCTAATATTGCAAATAACAACAACAACAATTTCATTACTCAACAAGATCTTCAAAGTTGGTTGTTCCAGATGGGAAATTCTTCATCTTCAAACTTGGGTGGCCTAGAATCTCTTCATCCAAATTTGTGCAACAATAATAATGATTCCTCTTCAGCAGGCCAATATTCTTCTTATGATGGTAGTGATGGAACCAACAACAACAACAACAACAATGTTAATTATCCCATGATGATGATGATGGATCTAAAGCCTATTAATAATAATGGGAGTAATTACTATGAAAATTCAAACTCATTCTCTAGCTTTGAAGAGAGTTCTTCAAACTCCATGTCCTATGACATGGAAACAAATAATAATGGAGGGACAAAATGGTCTTTTCATCATGAAGTAGTTGATGATCTTCATTCAGTGGCCTTTGGTTACAGCAGATGA 813 0.3985 MTGSGSPCGACKFLRRKCVRGCVFAPYFCHEQGATHFAAIHKVFGASNVSKLLAHLPVSDRCEAAVTISYEAQARLQDPIYGCVSHIFALQQQVVNLQAQLAYLKEQAAQQSCVNGGNPNHERYFDKPNIANNNNNNFITQQDLQSWLFQMGNSSSSNLGGLESLHPNLCNNNNDSSSAGQYSSYDGSDGTNNNNNNNVNYPMMMMMDLKPINNNGSNYYENSNSFSSFEESSSNSMSYDMETNNNGGTKWSFHHEVVDDLHSVAFGYSR 270
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc181409g00006 270 Coils Coil 87 107 - -
Stsc181409g00006 270 Pfam Lateral organ boundaries (LOB) domain 7 105 IPR004883 -
Stsc181409g00006 270 MobiDBLite consensus disorder prediction 170 197 - -
Stsc181409g00006 270 PANTHER LOB DOMAIN CONTAINING PROTEIN 1 190 - -
Stsc181409g00006 270 ProSiteProfiles LOB domain profile. 6 108 IPR004883 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc181409g00006 Stsc-Chr181409 50739 51998 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc181409g00006 7 185 AS2 family AT3G58190 60.541 3.74e-71 216
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Stsc181409g00006 LOB 7e-36 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc181409g00006 K13945 - gmx:100805623 273.092