Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc181409g00003 ATGGCTCCTAGTACTACTAGTGGCGCCGGTTCCGGTTCCGGCTCCGGATCGCCATGTGGGGCATGCAAATTCTTGAGGAGAAAGTGCGCGTCGGATTGCGTATTCGCACCATACTTCAGCTCGGAACAAGGGGCAGCAAGATTTGCAGCGATCCACAAGGTGTTTGGTGCAAGCAATGTTTCAAAGATGCTAATGCACATTCCAGCTCATGAAAGGTGTGAGGCTGTTGTCACCATAGCTTATGAGGCACAAGCTCGGATTAGAGACCCTGTTTATGGCTGTGTCTCTCATATTTTTGCCTTGCAACAACAGGTAGCATGCTTGCAAGCACAACTAATGCAAGTGAAGGCACAGCTAGCTCATCAAAACATGATGGAATCAAGAAACATGGAGAATCATCATCATCATCAATGGAACAATAATAATAATATTGGAGGAGGATATAATAATAATATTAATTACATGAACCTTATATCATCATCACCCCAAAGTTCATCACTTGATGAGTCATCAATTGATCAAAGTAGCATTAGTGATGGAATGAGCATGCTTACCAATAATGTTGAGGATTTCTCATTCCAAGCTTGTTCCAAGAGAAGATCATCATCATCATATAATAATGGTGATTTGGGTGAGCTGCAAGAATTGGCACTTAGGATGATGAGGAATAATAATTATAACTAG 684 0.4181 MAPSTTSGAGSGSGSGSPCGACKFLRRKCASDCVFAPYFSSEQGAARFAAIHKVFGASNVSKMLMHIPAHERCEAVVTIAYEAQARIRDPVYGCVSHIFALQQQVACLQAQLMQVKAQLAHQNMMESRNMENHHHHQWNNNNNIGGGYNNNINYMNLISSSPQSSSLDESSIDQSSISDGMSMLTNNVEDFSFQACSKRRSSSSYNNGDLGELQELALRMMRNNNYN 227
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc181409g00003 227 PANTHER LOB DOMAIN CONTAINING PROTEIN 14 204 - -
Stsc181409g00003 227 Coils Coil 98 118 - -
Stsc181409g00003 227 ProSiteProfiles LOB domain profile. 17 119 IPR004883 -
Stsc181409g00003 227 Pfam Lateral organ boundaries (LOB) domain 18 116 IPR004883 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc181409g00003 Stsc-Chr181409 21602 24126 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc181409g00003 6 223 AS2 family AT2G42430 53.441 1.19e-76 229
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Stsc181409g00003 LOB 1.5e-37 No_clan