Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc181409g00001 ATGAATTCCAGAAGAGACCCCCGTAACAGCAGGGCTGCTCTGTTTGACGGCATTGAGGAGGGAGGCATCCGATCATCTTCACTTTACTCCTCCTATAATGAAATTGATGAACAAGATAATGAGCGAGCAATGGGTGGATTGCATGATAGAGTCAGTCTGCTGAAAAAAATCTCAAGTGATATACACGAGGAGGTGGATAGTCATAACCGCATGCTGGACCGCATGGGCAATGACATGGATTCTTCAAGAGGAGTTCTTTCAGGAACTATGGACAAATTCAAAATGGTCTTTGAGAAAAAATCCAGCCGAAGAACGTTTTCGCTTATAGCATCATTTGTTGTGCTTTTTCTTATAATATACTATTTGACTCGGTAA 375 0.4187 MNSRRDPRNSRAALFDGIEEGGIRSSSLYSSYNEIDEQDNERAMGGLHDRVSLLKKISSDIHEEVDSHNRMLDRMGNDMDSSRGVLSGTMDKFKMVFEKKSSRRTFSLIASFVVLFLIIYYLTR 124
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc181409g00001 124 Gene3D - 42 105 - -
Stsc181409g00001 124 CDD SNARE_Bet1 37 94 IPR039899 -
Stsc181409g00001 124 PANTHER GOLGI SNARE BET1-RELATED 8 123 - -
Stsc181409g00001 124 SMART tSNARE_6 29 96 IPR000727 -
Stsc181409g00001 124 SUPERFAMILY SNARE fusion complex 28 96 - -
Stsc181409g00001 124 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 34 96 IPR000727 -
Stsc181409g00001 124 FunFam bet1-like SNARE 1-1 41 105 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc181409g00001 Stsc-Chr181409 5183 7879 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc181409g00001 35 123 SNARE and Associated Proteins AT1G28490 28.090 2.65e-07 45.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc181409g00001 K08504 - gmx:100500329 202.986