Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc181408g00011 ATGGCTCGTGCAACAAACTGGCTATCGTTCTCGCTCTCTCCAATGGAAATGCTAAGAACATCTGAGCCACACTTCCCTCAATACGACGCCGCTTCATCCGCCACCACCAACTACTTCGTCGATAACTTCTACCCCAACGGTTGGGGGAACCAGGGAAAGGAACAGCAACCGCACGGTATGGTGGAGCAGTCGCTGTTTATGACGAGCTACGTGGACTCGTCGTCGCAGGAGCTAGGTCACGCGCCGCCGCATGCGGCGGGGGCGACGACTGTGGTGCCGAAGCTGGAGGATTTTCTCGGCGATTCGTCGTCGTCGATGATGCGATACTCCGATAGCCAGACGGAGACGCAGGATTCATCGCTGACGACGCACATGTACGACCACGGCGGCGCCTACTTCGGCGGCGAGCACCAAGATCTGAAGGCCATTACTGGATTTCAAGCTTTCTCCGGTGCGAACTCCGGCTCTGAGGTGGACGACTCAGCCTCCATCGGTAGGGCACAGCACGGCGGTGGAAACGAGTTCGGGACACGGTCCGTTGATTCCTCCGGGAACGAGCTGGCGTTCTCCAACGGCGGCGCTGGTGCTACCGCCACCGGAGCTTTGTCACTAGGCGTTGCGCAGAGCTCGGCGGAGAAGGCCGTCGTAGCTTCCGATTCCGATAGCTCGAAGAAGATCGCCGATACCTTCGGTCAGCGAACTTCAATTTACAGAGGAGTCACTAGACACCGATGGACGGGTAGATATGAAGCGCATCTATGGGATAACAGCTGTAGAAGAGAGGGTCAGGCCAGAAAAGGGCGTCAAGTCTATTTGGGTGGATATGACAAGGAAGAAAAGGCCGCGAGAGCTTATGATTTGGCAGCCTTAAAATATTGGGGTCCCACTGCTACCACCAACTTCCCTGTTTCCAATTACCCAAAGGAACTAGAGGAGATGAAGCATGTAACAAAGCAAGAATTCATTGCATCACTTAGAAGGAAAAGTAGCGGTTTTTCCCGGGGAGCTTCCATATACAGAGGTGTTACAAGGCATCACCAACAAGGTAGGTGGCAAGCAAGAATTGGCCGCGTCGCCGGAAACAAAGATCTTTACTTAGGAACATTCGCAACTGAAGAAGAAGCAGCTGAGGCATATGACATAGCAGCCATAAAGTTCCGAGGTTCAAATGCAGTAACCAACTTTGAGATGAGCAGGTACGATGTTGATGCCATAATGAAGAGTTCTCTACCTGTCGGCGGCGCAGCCAAACGTCTGAAGCTCTCCCTAGAATCAGAGCAGAAGTCTGCCATCGCCGCCAGCAGCCAGCAGCAACCAGAGTGTGCAAACATGAGTAGTGGCAGCAATATCAACTTCTCCTCAGCCATACACCAACCAATTGCTTCCATCCCCTGCCGAATCCCATACGATTCCGCGCAAGCTTATTATCACCACAACCTCTTCCACCATTTCCATCCCAGCAATGGTGTAGAAACCGCTGTAACTTCTGCCAATGCAGCTGGACTGACTGCACTGCCGGCGGCGGCTGCAGCACCCGAGTTCTTCATATGGCCTCCCCAGTCCTATTGA 1569 0.5366 MARATNWLSFSLSPMEMLRTSEPHFPQYDAASSATTNYFVDNFYPNGWGNQGKEQQPHGMVEQSLFMTSYVDSSSQELGHAPPHAAGATTVVPKLEDFLGDSSSSMMRYSDSQTETQDSSLTTHMYDHGGAYFGGEHQDLKAITGFQAFSGANSGSEVDDSASIGRAQHGGGNEFGTRSVDSSGNELAFSNGGAGATATGALSLGVAQSSAEKAVVASDSDSSKKIADTFGQRTSIYRGVTRHRWTGRYEAHLWDNSCRREGQARKGRQVYLGGYDKEEKAARAYDLAALKYWGPTATTNFPVSNYPKELEEMKHVTKQEFIASLRRKSSGFSRGASIYRGVTRHHQQGRWQARIGRVAGNKDLYLGTFATEEEAAEAYDIAAIKFRGSNAVTNFEMSRYDVDAIMKSSLPVGGAAKRLKLSLESEQKSAIAASSQQQPECANMSSGSNINFSSAIHQPIASIPCRIPYDSAQAYYHHNLFHHFHPSNGVETAVTSANAAGLTALPAAAAAPEFFIWPPQSY 522
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc181408g00011 522 PRINTS Ethylene responsive element binding protein signature 378 398 IPR001471 GO:0003700|GO:0006355
Stsc181408g00011 522 PRINTS Ethylene responsive element binding protein signature 237 248 IPR001471 GO:0003700|GO:0006355
Stsc181408g00011 522 CDD AP2 337 398 IPR001471 GO:0003700|GO:0006355
Stsc181408g00011 522 Gene3D AP2/ERF domain 236 304 IPR036955 GO:0003700|GO:0006355
Stsc181408g00011 522 Gene3D AP2/ERF domain 338 398 IPR036955 GO:0003700|GO:0006355
Stsc181408g00011 522 FunFam AP2-like ethylene-responsive transcription factor ANT 235 304 - -
Stsc181408g00011 522 ProSiteProfiles AP2/ERF domain profile. 338 396 IPR001471 GO:0003700|GO:0006355
Stsc181408g00011 522 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 93 442 - -
Stsc181408g00011 522 ProSiteProfiles AP2/ERF domain profile. 236 302 IPR001471 GO:0003700|GO:0006355
Stsc181408g00011 522 Pfam AP2 domain 236 294 IPR001471 GO:0003700|GO:0006355
Stsc181408g00011 522 Pfam AP2 domain 338 388 IPR001471 GO:0003700|GO:0006355
Stsc181408g00011 522 CDD AP2 235 304 IPR001471 GO:0003700|GO:0006355
Stsc181408g00011 522 MobiDBLite consensus disorder prediction 157 184 - -
Stsc181408g00011 522 FunFam AP2-like ethylene-responsive transcription factor 337 398 - -
Stsc181408g00011 522 SUPERFAMILY DNA-binding domain 235 304 IPR016177 GO:0003677
Stsc181408g00011 522 SMART rav1_2 236 308 IPR001471 GO:0003700|GO:0006355
Stsc181408g00011 522 SMART rav1_2 338 402 IPR001471 GO:0003700|GO:0006355
Stsc181408g00011 522 SUPERFAMILY DNA-binding domain 337 398 IPR016177 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc181408g00011 Stsc-Chr181408 78377 83128 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc181408g00011 64 522 AP2-EREBP Transcription Factor Family AT5G10510 57.063 1.06e-168 486
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-AP2 Stsc181408g00011 AP2 9.9e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc181408g00011 K09285 - gmx:100775390 692.575