Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc181407g00009 ATGAAGAAAGAGAGCAGTGTCACTTTGAAAGCTGGAGAGCTCGCTTATCGAATGACTCGCACTCGAGCTGCTGCATTTCGAGCATCAGGACAGCTTCCACCACTGAAGGAACCAGCACAGCACCGGAATCAGAAGCAGCCGCAGCCGCGAGCCAATCCGAAAAGAGCAGTTTCTGATAATGCATGTCCTCAGCGCAAGAAGAGGGCTGTTCTTCAAGATGTTACTAATGTTTTCTGTGATAATACATACAGAAGCTGTTTCAATTCAACTAAAATTCAGGGTAAGAAGAGTAAGCTGGATAAGGCTAGTCGAATCGATGTTTCCAAAGTGGCGCCTTCTACTGCTGCTGAGCAACATGTTCAAGTTCACTGCAAAACAAAGAGTTTTCCAGAACCAGGTCATGAATCAGAAGATGCAGCTTGTTCAATTAATGCAGAAAACAATGCAGTCATAAGGCTTAGTGTGAAAGAGAGTGGCAAGAATGATAGAACTCATGCATCAGGAATCTCTCCTCTGCCTTTGATTTCTCAGAAGAAAGCCAAGAAGTGTAGTCCTTTTCCTATTGCATTAAGAGATCCAGAGATTGCTAACATAGATGATGATAATGAAGATCCTCAGCTGTGCAGCCTCTATGCTACCGATATCTGTAACAGCTTGCGAGTTTATGAGCTCGCAAGACGGCCGAATCCTAACTTCATGGACACAAAGCAGCTCGACATTACTCAAAGCATGCGCGGGATACTGGTTGATTGGCTTGTAGAGGTTTCTGAGGAATACAGATTGGGACTAGATACTCTTTATCTCACTGTGTATCTCATAGATTGGTTTCTCTCCAGAAATTACATTGAAAGACAGAAACTTCAGCTACTTGGGATCACTTGCATGTTAATCGCCTCGAAGTATGAAGAAATTAATGCCCCGCGAATCGAAGATTTTTGCTACATCACAGACAACACATACACAAAAGCGGAGGTACTGAAAATGGAGAGCCAAGTGTTGAAATCTTCTGGATATCAGCTTTTTGCTCCCACTACAATAAGTTTCCTCAGGAGGTTTCTCCGAGCTGCTCAAGCATCATACAAGAGTCCGAGCCTTGAATTGGAGTTCTTGGCCAACTATCTAGCTGAACTAACATTGATGGAATATAGTTTCTTGAATTTCCTGCCATCTACCATTGCTGCATCAGCTGTGTTTCTTGCAAAATGGACATTGGATCAGTCAAAACATCCATGGAATCCAACTCTTCAGCACTATTCTTGTTACAAACCATCAGATTTGAAAACCACAGTTCTTGCATTACAAGATCTGCAGTTAAATGTCAATGGAATCCCTCTAACTGCGATTCGCTCCAAGTACAGTCAAGACAAGTTTAAATGTGTAGGGACCTTCTCTCCACCTAAAATACCTGAAACTATGTTCTGA 1422 0.4262 MKKESSVTLKAGELAYRMTRTRAAAFRASGQLPPLKEPAQHRNQKQPQPRANPKRAVSDNACPQRKKRAVLQDVTNVFCDNTYRSCFNSTKIQGKKSKLDKASRIDVSKVAPSTAAEQHVQVHCKTKSFPEPGHESEDAACSINAENNAVIRLSVKESGKNDRTHASGISPLPLISQKKAKKCSPFPIALRDPEIANIDDDNEDPQLCSLYATDICNSLRVYELARRPNPNFMDTKQLDITQSMRGILVDWLVEVSEEYRLGLDTLYLTVYLIDWFLSRNYIERQKLQLLGITCMLIASKYEEINAPRIEDFCYITDNTYTKAEVLKMESQVLKSSGYQLFAPTTISFLRRFLRAAQASYKSPSLELEFLANYLAELTLMEYSFLNFLPSTIAASAVFLAKWTLDQSKHPWNPTLQHYSCYKPSDLKTTVLALQDLQLNVNGIPLTAIRSKYSQDKFKCVGTFSPPKIPETMF 473
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc181407g00009 473 SUPERFAMILY Cyclin-like 343 467 IPR036915 -
Stsc181407g00009 473 PANTHER CYCLINS 157 454 IPR039361 -
Stsc181407g00009 473 SMART cyclin_7 250 334 IPR013763 -
Stsc181407g00009 473 SMART cyclin_7 347 435 IPR013763 -
Stsc181407g00009 473 Gene3D - 228 341 - -
Stsc181407g00009 473 FunFam Cyclin A1 330 462 - -
Stsc181407g00009 473 Pfam Cyclin, C-terminal domain 343 465 IPR004367 -
Stsc181407g00009 473 Gene3D - 214 462 - -
Stsc181407g00009 473 Pfam Cyclin, N-terminal domain 214 335 IPR006671 -
Stsc181407g00009 473 FunFam Mitotic cyclin 6 228 328 - -
Stsc181407g00009 473 PIRSF Cyclin_A_B_D_E 17 472 IPR046965 GO:0016538|GO:0044772
Stsc181407g00009 473 MobiDBLite consensus disorder prediction 26 64 - -
Stsc181407g00009 473 SMART Cyclin_C_2 343 466 IPR004367 -
Stsc181407g00009 473 CDD CYCLIN_AtCycA-like_rpt2 343 457 - -
Stsc181407g00009 473 SUPERFAMILY Cyclin-like 203 339 IPR036915 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc181407g00009 Stsc-Chr181407 43477 47751 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc181407g00009 1 473 Core Cell Cycle Gene Families AT1G80370 51.760 1.26e-156 451
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc181407g00009 K06627 - gmx:100793657 631.328