Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc181407g00006 ATGGCTAAAGAAGGACTCGGACTTGAAATCACTGAGCTGAGGTTAGGTTTACCCGGTGAACCTAAAAGTTCGATGAGTGGTAATAAGAATGAGAAAAAGAGAATATTTTCGGAGATTGATGATGACAACGGTGGCAAGGAGGAGAAGAATAGCACCGGAGGCAACCTGAAGACTACTGAGCCGAAAGCTCAAGTTGTGGGGTGGCCTCCGGTGTGCTCGTACCGGAAGAAGAACATCGTGAATGAGGCTACAAAGATGTATGTGAAGGTTAGCATGGATGGTGCTCCTTTCTTGAGGAAGATTGATTTGGGTATGCATAAGGGATACTCTGAGTTAGCTTTGGCCTTGGAGAAGCTTTTTGGTTGCCATGGAATGGGGGAAGCATCGAAGGATGCAGAGAATTGTGAAAACGTTCCCATTTATGAAGACAAAGATGGTGATTGGATGCTTGTTGGAGATGTGCCTTGGGAAATGTTTATTGAATCATGCAAGAGGCTTAGGATTATGAAGAGATCAGAGGCAAAGGGCTTTGGTTTGGAGCCAAAAGGATCTTTAAAGTATTTCATAGAAGGCGTGGCAAATTGA 585 0.4427 MAKEGLGLEITELRLGLPGEPKSSMSGNKNEKKRIFSEIDDDNGGKEEKNSTGGNLKTTEPKAQVVGWPPVCSYRKKNIVNEATKMYVKVSMDGAPFLRKIDLGMHKGYSELALALEKLFGCHGMGEASKDAENCENVPIYEDKDGDWMLVGDVPWEMFIESCKRLRIMKRSEAKGFGLEPKGSLKYFIEGVAN 194
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc181407g00006 194 FunFam Auxin-responsive protein 80 181 - -
Stsc181407g00006 194 SUPERFAMILY CAD & PB1 domains 81 170 - -
Stsc181407g00006 194 Gene3D - 80 181 - -
Stsc181407g00006 194 MobiDBLite consensus disorder prediction 26 48 - -
Stsc181407g00006 194 ProSiteProfiles PB1 domain profile. 85 173 IPR000270 GO:0005515
Stsc181407g00006 194 MobiDBLite consensus disorder prediction 1 60 - -
Stsc181407g00006 194 Pfam AUX/IAA family 30 177 IPR033389 -
Stsc181407g00006 194 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 7 175 IPR003311 GO:0005634|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc181407g00006 Stsc-Chr181407 30918 35528 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc181407g00006 81 192 B3 DNA Binding Superfamily AT4G23980 34.821 3.48e-12 62.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX/IAA Stsc181407g00006 AUX_IAA 1.4e-46 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc181407g00006 K14484 - gmx:547784 292.352