Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc181406g00009 ATGGCGCCGTCCATTGCAGCCTGCATCACGGTCATTTTTACATTGATCAGCGCCGTCCACGCTGCATCATCATCTAGCGGATACCACAACTACACCGTAGGCGGCGCATCCGGGTGGTTGTTCAACTCCACCACCAGTACAGCCGCCACTAACTACACCACTTGGGCTTCAACTCAAACATTCAACCTCGGCGATTTTCTCATTTTCAACACGAACACGAATCAAACGGTGGTTCATACCTACAACGAGACCGCTTACCTGAGCTGCAACGCCGATGACTCCGACAACGGCACCTTCGTATACGACAGCGGAAGCACTACTTTCGGCGAGGCGTTGACCATTTCCGTTCCGTTGACCATCGTAGGAAGCAACTACTTCTTCTCCGACGAGGACGACGGCGTTCAGTGCCGTCATGGCCTAGCCTTCCAGATCAATGTCAACCGCGGCCAAGGCCTGCCTCCCAGCCTCAACCAGCCGCCACCGCCGCCCTACATTGAGCCGCCGGGCCCTGACGCCGCCGATCAGTCTCCACCGTCCACGATGACCATATCCCCTACTGGAGGCGCCTCAGCTCTGCGCGTTCACGCGCTCGTGGCGGTTTGTGGCTTCGCTGCGGCGATGTTGACACTGTTACGGATCGGAGTTGGTGTATGTTGTTTGGAATCTGGGAAAATGGGTTTGATTTCTGGCATTTTTCTTGGGATGGTGTTGGGCATAGCGTTGATGGCAGGTTGGCGTCGCATGATGAGGTACCGAAGCGCCAAAAGAACTGCAAAGGCAGTTGATGTTAAATTACTTGGATCCCTTAACAGAGATGATGTGAAGAGACTTTGTGGTGATAGCTTTCCTGAATGGATAACTTTTCCTGTATATGAGCAGGTGAAATGGCTAAACAAGCAGTTGTCTAAACTTTGGCCATTTGTGGCAGATGCAGCAGCAATGGTCATAAGAGAATCCGTTGAACCGATATTGGAACAGTATAGACCGCCCGGTATTAGTTCATTGAAGTTCAGTAAATTGTCCCTTGGAAATGTGGCTCCAAAAATTGAAGGTATTCGTGTTCAGCGACTCAAGAAAGGACAAATCACAATGGACATTGATTTCCGGTGGGGTGGTGATCCAGATATTATTTTGGCTGTCGATGCAACAATTGCATCGATCCCTATTCAGTTGAAGGATCTCCAAGTTTTCACTGTTATCCGTGTAATATTCCAACTTTGTGAAGACATGCCATGCATTTCTGCCGTTGTTGTTGCTCTACTTGCAGAGCCGAAGCCTAGAATCGATTACATTCTGAAGGCTGTTGGTGGAAGTTTGACAGCACTGCCTGGAGTTTCAGATATGATTGATGATACTGTGACCTCAATTGTTACTGATATGCTACAATGGCCTCATAGGATTGTTGTGCCACTTGGCGGTGTACCTGTTGATACAAGTGAACTGGAGCTTAAACCCTCTGGAAGGGTTACAGTAACAGTGATTCAAGCAAATGATTTAAAGAACATGGAAATGATTGGGAAATCTGATCCTTACGTAGCTGTGCATATTCGACCAATATTTAAGGTTAAAACCAAGGTTGTTGATAACAACCTGAATCCTGTTTGGAATGAGAAATTTGACCTGATTGCAGAAGACCTGGAGACTCAGTCCATCATTTTCGAGGTTTTTGATGAAGACATTGGGCAAGATAAGCGATTAGGAGTAGCCAAATTTCCACTTAGTGACTTGGAAGAAGAAACTGCAAGGGAGTATGAATTGAGGTTGCTAGCATCCCTTGATACAAAGGTTAAAGACAAGAAGGATCGAGGAACCTTGACAGTGATGCTTTATTATCACCATTTTAACAAGGAAGAGCAATTAGCTGCATTAGAAGAAGAGAAAAAGGCAATAGAAGAAATGCAGAAACGTAGAGATGAGCGAGTTGTAGGGACTACAAAGCAGACACTAGATAGAGCAGCATCAGTAGCCGGAACCGGTGTTGGAATGGTTGGCAGTGGTGTTGCCACCGGGGCTGGACTAGTCGGTAGCGGCGTTACTGCTGGAGCTGGACTAGTCGGTAGCGGCGTTACTGCTGGAGCTGGACTTGTTGGCAGCGGCATCAGTGCCGGAGCAGGGTATGTCGGCATTGGAGGTGGCGGTGTATCTGGACAAGGCAGCAATGCTAGTCCCAGCAGTGGCTCCGGTGGCGGTTTCATTGGCAATGTTGGTAGTGGACTAACCAAGGCAGGAAAGTTTGTAGGCAGAACATTTACAGGGCAAAGTGGAAGAAAGAGTGGTTCAACTACACCAGTCGGTAATTATGAGGAAACTGGGGGTGGTGCTAAGCCTAGGCCTGTTTGA 2340 0.4829 MAPSIAACITVIFTLISAVHAASSSSGYHNYTVGGASGWLFNSTTSTAATNYTTWASTQTFNLGDFLIFNTNTNQTVVHTYNETAYLSCNADDSDNGTFVYDSGSTTFGEALTISVPLTIVGSNYFFSDEDDGVQCRHGLAFQINVNRGQGLPPSLNQPPPPPYIEPPGPDAADQSPPSTMTISPTGGASALRVHALVAVCGFAAAMLTLLRIGVGVCCLESGKMGLISGIFLGMVLGIALMAGWRRMMRYRSAKRTAKAVDVKLLGSLNRDDVKRLCGDSFPEWITFPVYEQVKWLNKQLSKLWPFVADAAAMVIRESVEPILEQYRPPGISSLKFSKLSLGNVAPKIEGIRVQRLKKGQITMDIDFRWGGDPDIILAVDATIASIPIQLKDLQVFTVIRVIFQLCEDMPCISAVVVALLAEPKPRIDYILKAVGGSLTALPGVSDMIDDTVTSIVTDMLQWPHRIVVPLGGVPVDTSELELKPSGRVTVTVIQANDLKNMEMIGKSDPYVAVHIRPIFKVKTKVVDNNLNPVWNEKFDLIAEDLETQSIIFEVFDEDIGQDKRLGVAKFPLSDLEEETAREYELRLLASLDTKVKDKKDRGTLTVMLYYHHFNKEEQLAALEEEKKAIEEMQKRRDERVVGTTKQTLDRAASVAGTGVGMVGSGVATGAGLVGSGVTAGAGLVGSGVTAGAGLVGSGISAGAGYVGIGGGGVSGQGSNASPSSGSGGGFIGNVGSGLTKAGKFVGRTFTGQSGRKSGSTTPVGNYEETGGGAKPRPV 779
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc181406g00009 779 PRINTS C2 domain signature 504 516 IPR000008 -
Stsc181406g00009 779 PRINTS C2 domain signature 529 542 IPR000008 -
Stsc181406g00009 779 PRINTS C2 domain signature 551 559 IPR000008 -
Stsc181406g00009 779 SMART C2_3c 488 585 IPR000008 -
Stsc181406g00009 779 Pfam C2 domain 487 582 IPR000008 -
Stsc181406g00009 779 Pfam Synaptotagmin-like mitochondrial-lipid-binding domain 292 471 IPR039010 -
Stsc181406g00009 779 MobiDBLite consensus disorder prediction 151 185 - -
Stsc181406g00009 779 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 485 614 IPR035892 -
Stsc181406g00009 779 ProSiteProfiles Phytocyanin domain profile. 29 148 IPR003245 GO:0009055
Stsc181406g00009 779 CDD Phytocyanin 29 146 - -
Stsc181406g00009 779 ProSiteProfiles C2 domain profile. 470 588 IPR000008 -
Stsc181406g00009 779 CDD SMP_SYT 283 471 - -
Stsc181406g00009 779 Gene3D C2 domain 483 646 IPR035892 -
Stsc181406g00009 779 FunFam Early nodulin-like protein 18 28 149 - -
Stsc181406g00009 779 Coils Coil 613 640 - -
Stsc181406g00009 779 MobiDBLite consensus disorder prediction 154 174 - -
Stsc181406g00009 779 SUPERFAMILY Cupredoxins 29 146 IPR008972 -
Stsc181406g00009 779 PANTHER EXTENDED SYNAPTOTAGMIN-RELATED 225 658 IPR045050 GO:0008289
Stsc181406g00009 779 MobiDBLite consensus disorder prediction 751 767 - -
Stsc181406g00009 779 Gene3D - 29 151 IPR008972 -
Stsc181406g00009 779 Pfam Plastocyanin-like domain 49 139 IPR003245 GO:0009055
Stsc181406g00009 779 CDD C2 489 586 - -
Stsc181406g00009 779 ProSiteProfiles Synaptotagmin-like mitochondrial lipid-binding proteins (SMP) domain profile. 290 472 IPR031468 GO:0008289
Stsc181406g00009 779 MobiDBLite consensus disorder prediction 748 779 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc181406g00009 Stsc-Chr181406 51720 57862 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc181406g00009 1 176 Phytocyanin Superfamily AT1G08500 40.782 3.64e-36 134
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc181406g00009 - - pavi:110766707 795.038