Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc181406g00006 ATGGTGAGGGGAAAAACTCAGATGAGGCGCATAGAGAACGCAACAAGCAGGCAAGTAACATTCTCAAAGAGGCGAAATGGTTTGCTTAAGAAGGCATTTGAGCTTTCTGTTCTTTGTGATGCTGAGGTTGCTCTCATCATCTTCTCTCCAAGAGGCAAGCTTTATGAATTTGCTAGCTCCAGTATGCAAGAAACCATTGAACGATATCGAAGGCATACGCGGACTACTCAATCAGCACCTAGATCAGATGAACAAAATATGCAGCACTTAAAGCAAGAAACAGCAAGCTTGATGAAGAAGATTGAGATTCTTGAAGCTTCAAAACGAAAATTGTTAGGAGAAGGCTTGGGATCATGCACCTTAGAAGAGCTGCAACAGATAGAACAACAATTGGAAAAGAGTGTAACCACTGTCAGGGCTAAAAAGATTTTTCAAAAATTTTCAGACGCAGGTTTATAA 459 0.4074 MVRGKTQMRRIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVALIIFSPRGKLYEFASSSMQETIERYRRHTRTTQSAPRSDEQNMQHLKQETASLMKKIEILEASKRKLLGEGLGSCTLEELQQIEQQLEKSVTTVRAKKIFQKFSDAGL 152
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc181406g00006 152 Coils Coil 121 141 - -
Stsc181406g00006 152 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Stsc181406g00006 152 CDD MADS_MEF2_like 3 73 IPR033896 GO:0000977|GO:0045944
Stsc181406g00006 152 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Stsc181406g00006 152 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Stsc181406g00006 152 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Stsc181406g00006 152 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Stsc181406g00006 152 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Stsc181406g00006 152 SUPERFAMILY SRF-like 3 81 IPR036879 GO:0003677|GO:0046983
Stsc181406g00006 152 Coils Coil 87 107 - -
Stsc181406g00006 152 Pfam K-box region 83 142 IPR002487 GO:0003700|GO:0005634|GO:0006355
Stsc181406g00006 152 Gene3D - 13 96 IPR036879 GO:0003677|GO:0046983
Stsc181406g00006 152 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Stsc181406g00006 152 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 141 - -
Stsc181406g00006 152 ProSiteProfiles K-box domain profile. 87 152 IPR002487 GO:0003700|GO:0005634|GO:0006355
Stsc181406g00006 152 FunFam MADS-box protein SOC1 14 95 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc181406g00006 Stsc-Chr181406 23887 30430 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc181406g00006 1 142 MADS-box Gene Family AT2G45660 78.873 3.64e-80 232
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Stsc181406g00006 K-box 7e-18 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc181406g00006 - - gmx:100037477 246.514