Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc181406g00005 ATGGTGAGGGGAAAAACTCAGATGAGGCGCATAGAGAACGCAACAAGCAGGCAAGTAACATTCTCAAAGAGGCGAAATGGTTTGCTTAAGAAGGCATTTGAGCTTTCTGTTCTTTGTGATGCTGAGGTTGCTCTCATCATCTTCTCTCCAAGAGGCAAGCTTTATGAATTTGCTAGCTCCAGTATGCAAGAAACCATTGAACGATATCGAAGGCATACGCGGACTACTCAATCAGCACCTAGATCAGATGAACAAAATATGCAGCACTTAAAGCAAGAAACAGCAAGCTTGATGAAGAAGATTGAGATTCTTGAAGCTTCAAAACGAAAATTGTTAGGAGAAGGCTTGGGATCATGCACCTTAGAAGAGCTGCAACAGATAGAACAACAATTGGAAAAGAGTGTAACCACTGTCAGGGCTAAAAAGACGCAGGTTTATAAGGAACAAATTGACCAACTAAAGGAAAAGGAAAAAGCTCTAATTGCTGAAAATGCCAGACTCTCAGAACAGTATGGTATTCATCAAGCTCAAAAAGAAAATGAACAACAACAACCACCCTATGCAGAAAGTAGTCCAAGTTCAGATGTGGAGACTGAGTTATTCATTGGACTACATAGGTCTAATTGA 627 0.4051 MVRGKTQMRRIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVALIIFSPRGKLYEFASSSMQETIERYRRHTRTTQSAPRSDEQNMQHLKQETASLMKKIEILEASKRKLLGEGLGSCTLEELQQIEQQLEKSVTTVRAKKTQVYKEQIDQLKEKEKALIAENARLSEQYGIHQAQKENEQQQPPYAESSPSSDVETELFIGLHRSN 208
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc181406g00005 208 MobiDBLite consensus disorder prediction 172 197 - -
Stsc181406g00005 208 Coils Coil 121 141 - -
Stsc181406g00005 208 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Stsc181406g00005 208 Gene3D - 14 95 IPR036879 GO:0003677|GO:0046983
Stsc181406g00005 208 Pfam K-box region 83 170 IPR002487 GO:0003700|GO:0005634|GO:0006355
Stsc181406g00005 208 Coils Coil 143 184 - -
Stsc181406g00005 208 CDD MADS_MEF2_like 3 73 IPR033896 GO:0000977|GO:0045944
Stsc181406g00005 208 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Stsc181406g00005 208 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Stsc181406g00005 208 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Stsc181406g00005 208 ProSiteProfiles K-box domain profile. 87 177 IPR002487 GO:0003700|GO:0005634|GO:0006355
Stsc181406g00005 208 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 179 - -
Stsc181406g00005 208 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Stsc181406g00005 208 SUPERFAMILY SRF-like 3 80 IPR036879 GO:0003677|GO:0046983
Stsc181406g00005 208 FunFam MADS-box protein SOC1 14 95 - -
Stsc181406g00005 208 Coils Coil 87 107 - -
Stsc181406g00005 208 MobiDBLite consensus disorder prediction 172 208 - -
Stsc181406g00005 208 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Stsc181406g00005 208 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc181406g00005 Stsc-Chr181406 23440 30430 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc181406g00005 1 158 MADS-box Gene Family AT2G45660 78.481 2.86e-88 255
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Stsc181406g00005 K-box 4.4e-27 No_clan