Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc181405g00007 ATGGACGACATGGAAGACGACGCAAGGTACCCTCCAAAGTCGTTCCCTTTAAACCGCCAGAACCCTTCCCACCGCCACAAACACCCAGTTCGACCACCCCCATTCCACCACCACAACCCCCGCTACGACGATGACGATTACGAAGACGAAGAAGAACACGACGAATTCGAAAACTACGGGAACGATGCCGTTGATAACACCAACAACGAAGACGATGATGACAACCTCGGTAACGGGGGGCAAAATGGGTTTTTCAAGAAAAGGAAGGTCGGCGTGGGAGGTTCCCCTGTTCCGACGGGATACGAGTTCGCGCCACGTGTCAAGTACTCATACGGAGATGATTGGTCAGAGCATGCCACGTTCGTGCTTCTTGAGGTTTGGGGTGACAAGTTCCTGCAACTTGGGAGGACAAGTTTGAGGTCTGATGATTGGAACGAGGTTGCAGATAAGGTGTCTGATGAATTGAAATCTTTGAAGAGCGTTGCACAGTGCAAGAGCGTTTTGGATAAGCTCAAGAGAAGGTACAAGAAGGAGAAGGGAAAGGTTGAGGAGTTGGGTTTGGGTTCTTCCAAGTGGGCATTCTTCAAGAAGATGGATATGTTGATGGCTTCGTCGACAAGGCAAGAGTATGGTCTCGCTTGTGGCGTCGATGGTGGGGAGTATGTGTTCATGAACACAAGGGTGTACCTTAATAGGTCCACTGGGTTTGATGAGATGAGGGATAGTCCTGGTGAGAGTGAGAGTGATGAGGATGAGGATGGTGGTGGTGGTGGTGCTGCGGCCGCGGCGAGGAGGAGGAGTGGTGTTGGTGGTGGTGAGGATGATGAGGAGGATGAGAGTTCGTTTCGTGTGCTGGCAGATTCGATTCAGAAGTTTGGGAAGATATATGAGAAGATTGAGAATAGTAAGAGGCAGCAGATGATGGAGTTGGAGAAGATGAGGTTGGATTTCAATAGGGAGCTTGAGCTGCAGAAGAAGCAGATATTGGAAAGGGCTCAGGCCGAGATTTCAAAGATACAGGATGTCGATGAGGATGAAACCGACACTTCTACCGAGAATCTCAGTGAATGA 1071 0.4995 MDDMEDDARYPPKSFPLNRQNPSHRHKHPVRPPPFHHHNPRYDDDDYEDEEEHDEFENYGNDAVDNTNNEDDDDNLGNGGQNGFFKKRKVGVGGSPVPTGYEFAPRVKYSYGDDWSEHATFVLLEVWGDKFLQLGRTSLRSDDWNEVADKVSDELKSLKSVAQCKSVLDKLKRRYKKEKGKVEELGLGSSKWAFFKKMDMLMASSTRQEYGLACGVDGGEYVFMNTRVYLNRSTGFDEMRDSPGESESDEDEDGGGGGAAAAARRRSGVGGGEDDEEDESSFRVLADSIQKFGKIYEKIENSKRQQMMELEKMRLDFNRELELQKKQILERAQAEISKIQDVDEDETDTSTENLSE 356
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc181405g00007 356 Coils Coil 296 338 - -
Stsc181405g00007 356 PANTHER TRIHELIX TRANSCRIPTION FACTOR ASIL2 112 341 IPR044823 -
Stsc181405g00007 356 Gene3D - 115 177 - -
Stsc181405g00007 356 Pfam Myb/SANT-like DNA-binding domain 113 200 IPR044822 -
Stsc181405g00007 356 MobiDBLite consensus disorder prediction 1 91 - -
Stsc181405g00007 356 MobiDBLite consensus disorder prediction 335 356 - -
Stsc181405g00007 356 MobiDBLite consensus disorder prediction 235 283 - -
Stsc181405g00007 356 Coils Coil 161 181 - -
Stsc181405g00007 356 MobiDBLite consensus disorder prediction 20 35 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc181405g00007 Stsc-Chr181405 82229 84539 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc181405g00007 113 338 Trihelix Transcription Factor Family AT1G54060 33.462 8.33e-21 90.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Trihelix Stsc181405g00007 Myb_DNA-bind_4 4.7e-17 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc181405g00007 - - gmx:100790166 393.275