Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc181405g00005 ATGCCCACTCGATCAACGGGGACCATAACGCAAGACTGGGAGCCTGTTGTTCTGCACAAGTCCAGGCCCAAGGCCCAGGACCTTCGGAATCCCAAGGCCGTCAACCAGGCCCTGAGGTCAGGCGCCGAGGTGCAGACCATCAAGAAGTTTGACGCCGGCTCTAATAGAAAGCCCGGGCCTGGTATCAACGCGAGGAAGCTGGAGGAAGGGACGGAGCCCGCGGCGCTGGAGCGGGTGGCTGTGGAGGTGAGGCAGGCCATACAGAAGGCCCGTCTGGAAAAGAAGATGAGCCAGGCAGAGCTGGCGAAGCAGATCAACGAGAGGCCGCAGGTGGTGCAGGAGTACGAGAACGGCAAAGCCCAGCCCAACCAGGCGGTGCTCGCTAAGATGGAGAGAGTTCTTGGTGTCAAGCTCAGAGGCAAAATTGGAAAATGA 435 0.5977 MPTRSTGTITQDWEPVVLHKSRPKAQDLRNPKAVNQALRSGAEVQTIKKFDAGSNRKPGPGINARKLEEGTEPAALERVAVEVRQAIQKARLEKKMSQAELAKQINERPQVVQEYENGKAQPNQAVLAKMERVLGVKLRGKIGK 144
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc181405g00005 144 Coils Coil 87 107 - -
Stsc181405g00005 144 ProSiteProfiles Cro/C1-type HTH domain profile. 87 141 IPR001387 -
Stsc181405g00005 144 Gene3D - 70 144 IPR010982 GO:0003677
Stsc181405g00005 144 SMART mbf_short4 86 141 IPR001387 -
Stsc181405g00005 144 PANTHER ENDOTHELIAL DIFFERENTIATION-RELATED FACTOR 1 MULTIPROTEIN BRIDGING FACTOR 1 11 141 - -
Stsc181405g00005 144 SUPERFAMILY lambda repressor-like DNA-binding domains 82 138 IPR010982 GO:0003677
Stsc181405g00005 144 Pfam Helix-turn-helix 87 138 IPR001387 -
Stsc181405g00005 144 CDD HTH_XRE 85 138 IPR001387 -
Stsc181405g00005 144 FunFam Multiprotein bridging factor 1 71 144 - -
Stsc181405g00005 144 Pfam Multiprotein bridging factor 1 11 79 IPR013729 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc181405g00005 Stsc-Chr181405 66428 66862 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR MBF1 Stsc181405g00005 MBF1 1.3e-19 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc181405g00005 K03627 - qsa:O6P43_004045 239.965