Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc181405g00002 ATGGCAAATCTCAGTAATGGCAACGACCACATCAATAATGGTTCTTTTGTCAAGATTCCAAAGATAAAGTTTACAAAGCTCTTCATCAATGGAGAATTCGTGGATTCAGTTTCAGGAAAAAAGTTTGAGACAGTGGATCCAAGAACAGAAGAAGTGATTACAGAGATAGCGGAGGCTACAAAAGAAGATATTGATATTGCTGTGAAGGCAGCACGTAAAGCTTTTGATTCTGGTCCATGGCCTCGCATGACTGGTGCTGAGAGAGCAAAGATTATGCTAAAATGGGCAGCGCTAATTGAAGAGAACATTGAAGAGATAGCAGCATTGGACACCATGGATGGAGGGAAGCTATATAGTTGGTGTAAGAATGTGGATGTTCCTGAAGCATCAAATTTACTGCGTTACTATGCCGGTGCTGCTGATAAAATCCATGGAGAAGTGTTCAAAACTTCTAGGAACCTTCATTTGTATTCTCTTATGGAACCTGTTGGTGTTGTGGGACACATTATCCCTTGGAATTTTCCTACCATCATGTTCTTCACCAAGGCTAGCCCTGCCTTGGCTGCCGGCTGCACCATGGTCCTCAAGCCCGCCGAGCAAACGCCGCTCTCCGCTCTCTTCTATGCTCATCTTGCTAAGCTGGCTGGTATACCAGATGGAGTGCTTAATGTAGTACCTGGATTTGGTTCTATTGCTGGAGCTGCAATAGCCTCACATATGGATGTGGATTCGGTCAGTTTTACTGGTTCAACCGAGACTGGCCGGAAGGTAATGATGGCGGCAACCATGAGTAACTTGAAACCGGTTTCACTCGAATTAGGCGGCAAGTCCCCGGTCTTGATCTTTGATGATGCTGATGTTGACAAAGCTGTTGACCTTGCTCTCTTTGGAATCCTACACAACAAGGGAGAAATATGTGTTGCATTTTCCAGAGTTTATGTCCAAGAAGGAATTTATGATGAATTTGAGAAGAAGCTTGTGGAGAAGGCAAAAACATGGGTAGTAGGGGATCCATTTGATCCTAAAGTTCAACAAGGACCACAGACTAGTAAGGCACAATTTGAGAAAATTCTGTCCTATATTGAGCATGGAAAGAAAGAAGGAGCCACCCTTTTAACTGGGGGTAAAAGATTTGGAAACAAGGGCTACTACATTGAGCCTACAATTTTCTCTAATGTTAAGGAGGACATGCTAATATCACAAGATGAGATATTTGGACCTGTGATGGTGCTTTCTAAGTTTAGGAGCGTCGAGGAAGGAATTGAGAAAGCGAATAGCAGCAAATATGGGCTAGCATCAGGGATTGTGACAAAGAACATGGATATTGCAAACACAGTTTCAAGGTCCATAAGAGCAGGCATTGTTTGGATCAACTGCTTCTTTGCCTTTGATGTTGATTGCCCTTTTGGAGGCTACAAGATGAGTGGATTTGGAAGAGATTATGGATTGGAGGCACTTCACAAGTACCTTCAAGTTAAATCTGTTGCAACTCCTATTTACAATTCTCCCTGGCTTTGA 1518 0.4302 MANLSNGNDHINNGSFVKIPKIKFTKLFINGEFVDSVSGKKFETVDPRTEEVITEIAEATKEDIDIAVKAARKAFDSGPWPRMTGAERAKIMLKWAALIEENIEEIAALDTMDGGKLYSWCKNVDVPEASNLLRYYAGAADKIHGEVFKTSRNLHLYSLMEPVGVVGHIIPWNFPTIMFFTKASPALAAGCTMVLKPAEQTPLSALFYAHLAKLAGIPDGVLNVVPGFGSIAGAAIASHMDVDSVSFTGSTETGRKVMMAATMSNLKPVSLELGGKSPVLIFDDADVDKAVDLALFGILHNKGEICVAFSRVYVQEGIYDEFEKKLVEKAKTWVVGDPFDPKVQQGPQTSKAQFEKILSYIEHGKKEGATLLTGGKRFGNKGYYIEPTIFSNVKEDMLISQDEIFGPVMVLSKFRSVEEGIEKANSSKYGLASGIVTKNMDIANTVSRSIRAGIVWINCFFAFDVDCPFGGYKMSGFGRDYGLEALHKYLQVKSVATPIYNSPWL 505
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc181405g00002 505 PANTHER ALDEHYDE DEHYDROGENASE-RELATED 17 496 - -
Stsc181405g00002 505 ProSitePatterns Aldehyde dehydrogenases glutamic acid active site. 271 278 IPR029510 GO:0016491
Stsc181405g00002 505 FunFam ALD5p Mitochondrial aldehyde dehydrogenase 29 293 - -
Stsc181405g00002 505 Gene3D Aldehyde Dehydrogenase; Chain A, domain 2 275 464 IPR016163 GO:0016620
Stsc181405g00002 505 ProSitePatterns Aldehyde dehydrogenases cysteine active site. 299 310 IPR016160 GO:0016491
Stsc181405g00002 505 FunFam Aldehyde dehydrogenase3 275 464 - -
Stsc181405g00002 505 FunFam Aldehyde dehydrogenase, putative 467 493 - -
Stsc181405g00002 505 Gene3D Aldehyde Dehydrogenase; Chain A, domain 1 29 493 IPR016162 GO:0016491
Stsc181405g00002 505 Pfam Aldehyde dehydrogenase family 33 495 IPR015590 GO:0016491
Stsc181405g00002 505 SUPERFAMILY ALDH-like 18 501 IPR016161 GO:0016491
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc181405g00002 Stsc-Chr181405 11554 16831 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc181405g00002 8 505 Aldehyde Dehydrogenase Gene Family AT3G24503 69.339 0.0 731
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc181405g00002 K12355 - gmx:100784449 882.478