Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc181404g00007 ATGCAGGGTATCTGCTTGATGTTATGCTTCTTGTTGGTGGCTATTGCATTAGGTAATTCAGACATTGATGCACTCCTTGAACTCAAGAAGAGTTTTCGGGACAACCCTGCCAAACTAGTCCTCGAATCGTGGGATTCTAAGTTCTTAGATTCTGATGGATGCCCACAGAACTGGTATGGAATATTGTGTAGTGAGGGAAGTGTTCTATCAATTGTTTTGGACAATGCCGGGTTGGTCGGAGAGTTTAGTTTCCCTGCAATTGGTGGCCTTAAAATGCTTCGAAACTTGTCTCTAGCGAACAACCAATTCACAGGAAGTATCTTGCAATTTGGTCAGATGGAGTTTCTTGAATATCTTGATTTGTCCTCAAACAAGTTTAATGGATTGTTACCCTCGAACCTTGTCGAATTGCGGAGTTTAGTGTATCTGAATCTTTCTTCAAATGAATTTGAAGGTACTCTTCCTGTTGGGTTTTACAAACTTAGGAAGCTCAAGTATTTAGATTTGAACACTAATAACTTTTCTGGGGATGTTATGCATATCTTTTCTCAGATGGGGAGTGTTGTACATGTGGACTTAAGCCGCAACAGGTTTTCCGGGACACCGGATTTGGGACTCGGACCTGTGTCGTTTCTATCTTCGGTTAAACATTTAAATGTCGGCCACAATTCTTTGGTTGGTGAGCTTTTTGCTCATGATGGAATGCCTTACCTTGATAGTTTAGAGGTCTTTGATGCTAGCAATAATAAGTTAGAGGGTAACTTACCTTCCTTCGCATTCGTGGTATCGCTGCGCATTCTTCGGCTTCAATGCAACCAATTGTCCGGTTCGCTACCAGAAACTTTGTTGCAAGAAAGTTCAATGTTGTCTGAACTTGATCTCAGTCAAAACAAGATTGAAGGTCCCATTGGAAGTATCACTTCTGTCACTCTGAGGAAACTCAACATGTCTTGGAACAAATTGTCCGGTGCCTTGCCTCTCAAGGTAGGCCACTGCATCATCATAGATTTGAGTAATAACATGCTGTCCGGTAATTTGTCGAGGATCCGGTATTGGGGTAACTATGTGGAAGTCATTCAGCTGAGTTCAAACTCATTGACAGGTACTCTGCCAAATGAAACTACTCAGTTCTTAAGGTTAACTGAACTTATGGTATCAAATAACTCATTGGAAGGCGTTCTTTCGCCGATCTTGGGAACATATCCAGAGCTAAGAGAGATTGATCTTAGCCTCAACCAGCTTTCCGGGTTCCTCCTACCGAGTTTTTTCATCTCAACCAAGTTGACTAAACTTAACCTTTCGAACAATAAGTTTTCTGGACCGATTCTTCAACAAGATCGAAATGATCCTTCGGTTTCTTCTGAAAATTCTAGTATGGTGTATCTTGATCTTTCATACAACAACTTGAGTGGGGTTATACCTTCAGAATTAAGCAAGCTTCACAATTTGACTTGTCTCAATCTATGCAGCAACAAATTGGAAGGTACTATTCCGAATGACCTTCCGGCTTTGCGAGATTTTAATGTGTCCTTGAATAATCTCTCCGGTGTTGTACCATTCAACTTAATGCAATTTCCTGAATCATCATTTCATCCGGGAAACTCTTTGCTGATTCTTTCGAAATCACAGTCATCACCGGAAGTTGGTTCCAACTTCGGTTTGAGACAACATAAAAAATCTGCAATAAGGATTGCTTTGATTGCAAGTTTAGTTACTGGTTTTCTGGTTATGGCCTTTGTTGGTATGGCGATTTATTACATGGTTCGCCGGCAAAAAGAAGGGACTTCAAAGCAAAATGAAGCAAGAGGCATAGTCCAGAGTTCTTCATTACCAACCAGAGAAGAACCTAACAAAAATTTGGAAGCAGTAACATCTTCTCATGGTGGATCAGCTGATGATGGAGGAAACATTGATGCATTGACACACAAGCCAAAAGATGATGACATGCTTTCTCCAATGTCTTACGTGTCAACTTCGAACCCTTCATCTTCTATAAGTCCTCAGTTTGAGAATCCAGGTTCCCTCAGTGTATCCTCTCCGGATAAACTAGGCGGGTACCTGAATCTATTGGATGGATCTTTGGTGTTAACAGGTGAAGAACTTTCGAGTGCTCCGGCCGAAATTATTGGTAGGAGTTGTCATGGAACACTATACAAAGCTACGCTTGACTCTGGTCATGAATTGGCTGTAAAATGGTTAAGGGAAGGCATCACTAAAGGGAAGAAGGAGTTTGCGAGGGAAGTTCGAAAACTCGGGACTATCAAGCATCCCAGCCTGGTTTCTATTCAGGGTTACTACTTGGGACCAAAGGAGCATGAGAGACTGATTATAACTAATTTTATTAATGCACATTCTTTGGACATTTATCTCCATGAGGCGGAAAAAAGAAATCTCCAACCTTTATCTCTTGATGAAAGGCTGAGAGTGGCGGTGGAAGTGGCGCGGTGTCTGCATTACCTACACAATGAGAAGGCCATACCTCATGGTAATCTCAAATCCACAAACATTCTACTCGAAGCTCCAAACCGGAGCGTCCGGCTGACTGACTACAGCCTGCACCGGATACTAACCGCTGCAGGCACAGCCGAGCAAGTCTTGAACTCCGGTGCTCTCGGTTACATGCCTCCCGAATTTGCCAGATCATCAAGCAAACCATCCCCTTCTTTAAAGAGTGATGTATATGCATTTGGAGTAGTCTTGTTAGAGCTCATAACAGGACAAAAATCGGGTGAAATATTGTCCGAGATTCCCGGAGCCGTCGACCTGACCGATTGGGTAAGGTTCTTAGCCAGCGAAAACCACTCTAATGAATGCTTTGATAGGTTACTTGTGGAACAAGAAAGCAGTGAAAGACAATCTAGAATCCTTGATGAAATGCTTAAGGTTGCTCTTAGATGCACTCTTCCAGCTTCAGAGAGGCCTGACATGGAAACAGCTTTTGATGATCTTTCATTAATAAGGTAG 2964 0.4227 MQGICLMLCFLLVAIALGNSDIDALLELKKSFRDNPAKLVLESWDSKFLDSDGCPQNWYGILCSEGSVLSIVLDNAGLVGEFSFPAIGGLKMLRNLSLANNQFTGSILQFGQMEFLEYLDLSSNKFNGLLPSNLVELRSLVYLNLSSNEFEGTLPVGFYKLRKLKYLDLNTNNFSGDVMHIFSQMGSVVHVDLSRNRFSGTPDLGLGPVSFLSSVKHLNVGHNSLVGELFAHDGMPYLDSLEVFDASNNKLEGNLPSFAFVVSLRILRLQCNQLSGSLPETLLQESSMLSELDLSQNKIEGPIGSITSVTLRKLNMSWNKLSGALPLKVGHCIIIDLSNNMLSGNLSRIRYWGNYVEVIQLSSNSLTGTLPNETTQFLRLTELMVSNNSLEGVLSPILGTYPELREIDLSLNQLSGFLLPSFFISTKLTKLNLSNNKFSGPILQQDRNDPSVSSENSSMVYLDLSYNNLSGVIPSELSKLHNLTCLNLCSNKLEGTIPNDLPALRDFNVSLNNLSGVVPFNLMQFPESSFHPGNSLLILSKSQSSPEVGSNFGLRQHKKSAIRIALIASLVTGFLVMAFVGMAIYYMVRRQKEGTSKQNEARGIVQSSSLPTREEPNKNLEAVTSSHGGSADDGGNIDALTHKPKDDDMLSPMSYVSTSNPSSSISPQFENPGSLSVSSPDKLGGYLNLLDGSLVLTGEELSSAPAEIIGRSCHGTLYKATLDSGHELAVKWLREGITKGKKEFAREVRKLGTIKHPSLVSIQGYYLGPKEHERLIITNFINAHSLDIYLHEAEKRNLQPLSLDERLRVAVEVARCLHYLHNEKAIPHGNLKSTNILLEAPNRSVRLTDYSLHRILTAAGTAEQVLNSGALGYMPPEFARSSSKPSPSLKSDVYAFGVVLLELITGQKSGEILSEIPGAVDLTDWVRFLASENHSNECFDRLLVEQESSERQSRILDEMLKVALRCTLPASERPDMETAFDDLSLIR 987
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc181404g00007 987 Pfam Leucine rich repeat N-terminal domain 19 64 IPR013210 -
Stsc181404g00007 987 MobiDBLite consensus disorder prediction 598 616 - -
Stsc181404g00007 987 Pfam Leucine Rich repeat 456 471 IPR001611 GO:0005515
Stsc181404g00007 987 Pfam Leucine Rich repeat 425 442 IPR001611 GO:0005515
Stsc181404g00007 987 PANTHER OS07G0626500 PROTEIN 7 93 - -
Stsc181404g00007 987 Gene3D Transferase(Phosphotransferase) domain 1 782 987 - -
Stsc181404g00007 987 MobiDBLite consensus disorder prediction 655 677 - -
Stsc181404g00007 987 MobiDBLite consensus disorder prediction 622 641 - -
Stsc181404g00007 987 FunFam Leucine-rich repeat receptor-like protein kinase 688 780 - -
Stsc181404g00007 987 SUPERFAMILY Protein kinase-like (PK-like) 707 983 IPR011009 -
Stsc181404g00007 987 Gene3D Ribonuclease Inhibitor 184 546 IPR032675 -
Stsc181404g00007 987 ProSiteProfiles Protein kinase domain profile. 703 985 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc181404g00007 987 Gene3D Ribonuclease Inhibitor 20 183 IPR032675 -
Stsc181404g00007 987 FunFam protein STRUBBELIG-RECEPTOR FAMILY 3 18 206 - -
Stsc181404g00007 987 SUPERFAMILY L domain-like 23 301 - -
Stsc181404g00007 987 MobiDBLite consensus disorder prediction 595 616 - -
Stsc181404g00007 987 FunFam LRR receptor-like serine/threonine-protein kinase GSO1 263 546 - -
Stsc181404g00007 987 Pfam Protein tyrosine and serine/threonine kinase 707 978 IPR001245 GO:0004672|GO:0006468
Stsc181404g00007 987 Gene3D Phosphorylase Kinase; domain 1 702 780 - -
Stsc181404g00007 987 SUPERFAMILY L domain-like 236 515 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc181404g00007 Stsc-Chr181404 64311 67541 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc181404g00007 70 976 Receptor kinase-like Gene Family AT5G07280 29.486 2.10e-81 286
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-III Stsc181404g00007 PK_Tyr_Ser-Thr 2.7e-31 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc181404g00007 - - ccaj:109792420 1409.43