LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Stsc181402g00007	ATGGATAATTCTGGTGGTGTATTGGCCTTGCCTCCTGTGAATAATGTGTTCAAAACAAGGGTGCCTCATGATTTTGAGGAGGATTTTGTAGAGAAAGATCCTACCGGACGGTACCTTAGGTACAATGAAATCTTGGGGAAAGGTGCCTTCAAGACTGTTTATAGGGCCTTTGATGAAGTCGAAGGAATAGAAGTTGCTTGGAACCAAGTTAGGATTGATGGCCTCTTGCACACAGTAGATGATCTTGCGAAATTGTATTCTGAAGTCAATATATTGAAGTCTTTGAATCATGAAAATATCATTACTTTCTATGATTCTTGGGTTGATGATAAGCAGCATACCGTTAACATGATCACTGAACTTTTTACATCTGGAAATTTAAGGCTGTACCGTCAAAGGCATAAATATGTTGAAGTGAAAGCCATAAAAGGCTGGGCTCGGCAGATTCTTCAAGGGTTAGCATATCTTCACAGTCACAAACCACCTATAATTCACAGAGACTTGAAATGTGACAACATCTTTGTTAATGGAAACCATGGAGAAGTCAAGATAGGGGACCTAGGTTTGGCGATTGTCATGCAGCAACCAACGGCTCAAAGTGTTATTGGGACTCCTGAGTTTATGGCTCCAGAACTATATGAGGAGGAATACACTGAACTTGTTGACATATATTCATTTGGAATGTGCATACTAGAAATGATTACTCTTGAGTATCCGTATTCTGAATGTAAAAACCCGGCTCAAATCTTTAAGAAAGTTACCTTGGGCATCAAACCCGCTTCCCTTAATAAGGTGAGCGACCCCCAAATTAGGCAATTTATTGAGAAATGTCTTGTTCCGGCGTCTCAGAGATTGTCTGCAGAGGAGCTTCTTAAAGATCCGTTCCTGCAAGTTGAGAATGGCCCTAGGCTTGGTCGTTGCAAGTCTCGACTATCCGTGGACATAGATAGTGAATGCAGACAGAATTATGCAAGTAGCGATGCCGGAAGCATCAAAGGCAGTGTGCATAGTCCTGTTTTCGAAGTTAAGAGGACAAATAAGAACAACGAGTTTAGGTTGAGAGGAACCAAAAATGATGATAACTCGATATCATTGAACTTGCGTATTGCTGATACTAATGGTGGAGTAAGGAATATACATTTTCTCTTCTACCTTGATACAGATACTGCTCTCTCGGTGGCATCAGAGATGGTTGAGCATTTGGAGCTCGCAGATCATGATGTAGCCTTCATAGCTGAGCTTATCGATTACTTGGTGTTTAAGCTTCTACCTTGGTGGAAGCCTTCATCTACACAGGTAGATGGCCAAACAGTGACACGTCCATGGAGTCCTGTCCCAAACGGTGTTCCCTCCGAGCCAGTTGCTGGACAAGATAACTTCTCCGAACTCAATGCATCCCAAGAAGATTTTGTCTCAGATGAGAAGAGTAACCTTTCGCAGGAAGCCGATGATGCTTACTACCAGGACAATCGTAGTTCTTCTGCAAGTCTATGCGACTCGGAATATCAACATTCTCAAGGATCCTCGGCATCGGAGGTTATTGTAGATGTTACTCATATGAAAAGCGACGATATTCTTTATTCCAATGCTTCAGCAAACCTTAAATTCGTAAGTGCTTCCCCCTCCATAAGCGAGTTTCACGATATGGATTTCGAGGATTGCAAGTTGCACACAGGGGATTGCGGTTGTGGAGATGGCGAAGTGATAAACGAATTCTCATCAAAGAACAACTTATTGCCAATTTTTGAAAGGTCTAATTTTTTGAGCTTGGCAAAAAGCTTTTCTTCTGTGTCTTCAACTACTGACATGGATTTTGAACTGAAGTTTGAGCTTCAAGAAATTGAGTCACAGTATCAAACATGGATTGATGAAATCTGTAGAATGAAGTTAGAGGCATTGGAAGCAGCCAAAAAGAGATGGGTGGAGAAAAAGAAAGTTTCTGCTGAAGCTTGTTGA	1956	0.4156	MDNSGGVLALPPVNNVFKTRVPHDFEEDFVEKDPTGRYLRYNEILGKGAFKTVYRAFDEVEGIEVAWNQVRIDGLLHTVDDLAKLYSEVNILKSLNHENIITFYDSWVDDKQHTVNMITELFTSGNLRLYRQRHKYVEVKAIKGWARQILQGLAYLHSHKPPIIHRDLKCDNIFVNGNHGEVKIGDLGLAIVMQQPTAQSVIGTPEFMAPELYEEEYTELVDIYSFGMCILEMITLEYPYSECKNPAQIFKKVTLGIKPASLNKVSDPQIRQFIEKCLVPASQRLSAEELLKDPFLQVENGPRLGRCKSRLSVDIDSECRQNYASSDAGSIKGSVHSPVFEVKRTNKNNEFRLRGTKNDDNSISLNLRIADTNGGVRNIHFLFYLDTDTALSVASEMVEHLELADHDVAFIAELIDYLVFKLLPWWKPSSTQVDGQTVTRPWSPVPNGVPSEPVAGQDNFSELNASQEDFVSDEKSNLSQEADDAYYQDNRSSSASLCDSEYQHSQGSSASEVIVDVTHMKSDDILYSNASANLKFVSASPSISEFHDMDFEDCKLHTGDCGCGDGEVINEFSSKNNLLPIFERSNFLSLAKSFSSVSSTTDMDFELKFELQEIESQYQTWIDEICRMKLEALEAAKKRWVEKKKVSAEAC	651

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Annotation information

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Seq ID	Length	Analysis	Description	Start	End	IPR	GO
Stsc181402g00007	651	Gene3D	Phosphorylase Kinase; domain 1	23	120	-	-
Stsc181402g00007	651	MobiDBLite	consensus disorder prediction	436	458	-	-
Stsc181402g00007	651	Pfam	Oxidative-stress-responsive kinase 1 C-terminal domain	363	419	IPR024678	GO:0004674\|GO:0005524
Stsc181402g00007	651	CDD	STKc_WNK	37	296	-	-
Stsc181402g00007	651	Gene3D	-	361	436	-	-
Stsc181402g00007	651	PANTHER	SERINE/THREONINE-PROTEIN KINASE WNK WITH NO LYSINE -RELATED	24	508	-	-
Stsc181402g00007	651	SMART	serkin_6	39	296	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
Stsc181402g00007	651	ProSiteProfiles	Protein kinase domain profile.	39	296	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
Stsc181402g00007	651	SUPERFAMILY	Protein kinase-like (PK-like)	40	297	IPR011009	-
Stsc181402g00007	651	FunFam	Probable serine/threonine-protein kinase WNK1	24	120	-	-

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Duplication type information

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Select	Gene	Chromosome	Start	End	Duplicated_type
	Stsc181402g00007	Stsc-Chr181402	38738	42915	Dispersed/Wgd

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Stsc181402g00007	26	423	MAP Kinase Kinase Kinase	AT5G41990	59.375	2.06e-167	489

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Transcription factors information

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Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	WNK_NRBP	Stsc181402g00007		Pkinase	1.6e-52	CL0016

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Pathway information

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Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Stsc181402g00007	K08867		-	gmx:100809602	850.892

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