Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc181402g00007 ATGGATAATTCTGGTGGTGTATTGGCCTTGCCTCCTGTGAATAATGTGTTCAAAACAAGGGTGCCTCATGATTTTGAGGAGGATTTTGTAGAGAAAGATCCTACCGGACGGTACCTTAGGTACAATGAAATCTTGGGGAAAGGTGCCTTCAAGACTGTTTATAGGGCCTTTGATGAAGTCGAAGGAATAGAAGTTGCTTGGAACCAAGTTAGGATTGATGGCCTCTTGCACACAGTAGATGATCTTGCGAAATTGTATTCTGAAGTCAATATATTGAAGTCTTTGAATCATGAAAATATCATTACTTTCTATGATTCTTGGGTTGATGATAAGCAGCATACCGTTAACATGATCACTGAACTTTTTACATCTGGAAATTTAAGGCTGTACCGTCAAAGGCATAAATATGTTGAAGTGAAAGCCATAAAAGGCTGGGCTCGGCAGATTCTTCAAGGGTTAGCATATCTTCACAGTCACAAACCACCTATAATTCACAGAGACTTGAAATGTGACAACATCTTTGTTAATGGAAACCATGGAGAAGTCAAGATAGGGGACCTAGGTTTGGCGATTGTCATGCAGCAACCAACGGCTCAAAGTGTTATTGGGACTCCTGAGTTTATGGCTCCAGAACTATATGAGGAGGAATACACTGAACTTGTTGACATATATTCATTTGGAATGTGCATACTAGAAATGATTACTCTTGAGTATCCGTATTCTGAATGTAAAAACCCGGCTCAAATCTTTAAGAAAGTTACCTTGGGCATCAAACCCGCTTCCCTTAATAAGGTGAGCGACCCCCAAATTAGGCAATTTATTGAGAAATGTCTTGTTCCGGCGTCTCAGAGATTGTCTGCAGAGGAGCTTCTTAAAGATCCGTTCCTGCAAGTTGAGAATGGCCCTAGGCTTGGTCGTTGCAAGTCTCGACTATCCGTGGACATAGATAGTGAATGCAGACAGAATTATGCAAGTAGCGATGCCGGAAGCATCAAAGGCAGTGTGCATAGTCCTGTTTTCGAAGTTAAGAGGACAAATAAGAACAACGAGTTTAGGTTGAGAGGAACCAAAAATGATGATAACTCGATATCATTGAACTTGCGTATTGCTGATACTAATGGTGGAGTAAGGAATATACATTTTCTCTTCTACCTTGATACAGATACTGCTCTCTCGGTGGCATCAGAGATGGTTGAGCATTTGGAGCTCGCAGATCATGATGTAGCCTTCATAGCTGAGCTTATCGATTACTTGGTGTTTAAGCTTCTACCTTGGTGGAAGCCTTCATCTACACAGGTAGATGGCCAAACAGTGACACGTCCATGGAGTCCTGTCCCAAACGGTGTTCCCTCCGAGCCAGTTGCTGGACAAGATAACTTCTCCGAACTCAATGCATCCCAAGAAGATTTTGTCTCAGATGAGAAGAGTAACCTTTCGCAGGAAGCCGATGATGCTTACTACCAGGACAATCGTAGTTCTTCTGCAAGTCTATGCGACTCGGAATATCAACATTCTCAAGGATCCTCGGCATCGGAGGTTATTGTAGATGTTACTCATATGAAAAGCGACGATATTCTTTATTCCAATGCTTCAGCAAACCTTAAATTCGTAAGTGCTTCCCCCTCCATAAGCGAGTTTCACGATATGGATTTCGAGGATTGCAAGTTGCACACAGGGGATTGCGGTTGTGGAGATGGCGAAGTGATAAACGAATTCTCATCAAAGAACAACTTATTGCCAATTTTTGAAAGGTCTAATTTTTTGAGCTTGGCAAAAAGCTTTTCTTCTGTGTCTTCAACTACTGACATGGATTTTGAACTGAAGTTTGAGCTTCAAGAAATTGAGTCACAGTATCAAACATGGATTGATGAAATCTGTAGAATGAAGTTAGAGGCATTGGAAGCAGCCAAAAAGAGATGGGTGGAGAAAAAGAAAGTTTCTGCTGAAGCTTGTTGA 1956 0.4156 MDNSGGVLALPPVNNVFKTRVPHDFEEDFVEKDPTGRYLRYNEILGKGAFKTVYRAFDEVEGIEVAWNQVRIDGLLHTVDDLAKLYSEVNILKSLNHENIITFYDSWVDDKQHTVNMITELFTSGNLRLYRQRHKYVEVKAIKGWARQILQGLAYLHSHKPPIIHRDLKCDNIFVNGNHGEVKIGDLGLAIVMQQPTAQSVIGTPEFMAPELYEEEYTELVDIYSFGMCILEMITLEYPYSECKNPAQIFKKVTLGIKPASLNKVSDPQIRQFIEKCLVPASQRLSAEELLKDPFLQVENGPRLGRCKSRLSVDIDSECRQNYASSDAGSIKGSVHSPVFEVKRTNKNNEFRLRGTKNDDNSISLNLRIADTNGGVRNIHFLFYLDTDTALSVASEMVEHLELADHDVAFIAELIDYLVFKLLPWWKPSSTQVDGQTVTRPWSPVPNGVPSEPVAGQDNFSELNASQEDFVSDEKSNLSQEADDAYYQDNRSSSASLCDSEYQHSQGSSASEVIVDVTHMKSDDILYSNASANLKFVSASPSISEFHDMDFEDCKLHTGDCGCGDGEVINEFSSKNNLLPIFERSNFLSLAKSFSSVSSTTDMDFELKFELQEIESQYQTWIDEICRMKLEALEAAKKRWVEKKKVSAEAC 651
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc181402g00007 651 Gene3D Phosphorylase Kinase; domain 1 23 120 - -
Stsc181402g00007 651 MobiDBLite consensus disorder prediction 436 458 - -
Stsc181402g00007 651 Pfam Oxidative-stress-responsive kinase 1 C-terminal domain 363 419 IPR024678 GO:0004674|GO:0005524
Stsc181402g00007 651 CDD STKc_WNK 37 296 - -
Stsc181402g00007 651 Gene3D - 361 436 - -
Stsc181402g00007 651 PANTHER SERINE/THREONINE-PROTEIN KINASE WNK WITH NO LYSINE -RELATED 24 508 - -
Stsc181402g00007 651 SMART serkin_6 39 296 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc181402g00007 651 ProSiteProfiles Protein kinase domain profile. 39 296 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc181402g00007 651 SUPERFAMILY Protein kinase-like (PK-like) 40 297 IPR011009 -
Stsc181402g00007 651 FunFam Probable serine/threonine-protein kinase WNK1 24 120 - -
Stsc181402g00007 651 FunFam probable serine/threonine-protein kinase WNK9 122 301 - -
Stsc181402g00007 651 ProSitePatterns Serine/Threonine protein kinases active-site signature. 163 175 IPR008271 GO:0004672|GO:0006468
Stsc181402g00007 651 Gene3D Transferase(Phosphotransferase) domain 1 122 301 - -
Stsc181402g00007 651 Pfam Protein kinase domain 42 296 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc181402g00007 Stsc-Chr181402 38738 42915 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc181402g00007 26 423 MAP Kinase Kinase Kinase AT5G41990 59.375 2.06e-167 489
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK WNK_NRBP Stsc181402g00007 Pkinase 1.6e-52 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc181402g00007 K08867 - gmx:100809602 850.892