Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc181402g00004 ATGAGGCCGGTTTTTGCTGGAAATCTGGAGTATGATACACGACAATCGGAGCTGGAGCGATTGTTCTCAAAGTACGGAAGGATTGACCGGGTTGACATGAAATCTGGTTTTGCTTTTGTCTATTATGAGGATGAGCGTGATGCTGAAGAAGCAATTCGTGCACTTGACAATTTTCCATTTGGTTATGAAAAGCGAAGGCTCTCTGTTGAATGGGCTAGGGGTGAACGCGGACGTCATCGTGATGGCTCAAGGGCAAACCAGAAGCCAACAAAAACCCTGTTTGTGATCAACTTTGACCCAATTCGTACTAGAGTTCGTGATATAGAGAAGCACTTTGAACCTTATGGGAAGGTTCTTCATGTCCGAATTCGTAGGAACTTTGCGTTTGTGCAGTTTGAAACACAAGAAGATGCCACAAAAGCTCTTGAGTGTACAAATATGAGTAAGATACTGGACAGGGTGGTGTCTGTGGAGTATGCACTGAGGGATGATGGTGAGAGGGGTGAGAATTATGACAGTCCAAGACGTGGTGGTGGTTATGACAGATCACCTAGTCCAGCCTATCGCAGGCGGCCAAGTCCTGACTACGGTCAGCCCCACAGCCCTGTGTATGATAGGTATAATGGACCTGACAGGCGTAGGAGTCCTGATTACGGCAGGCACAGGAGTCCTGATTACGGCAGGCACAGGAGCCCTGATTATGGAAGATACCGCAGCCCTTCGCCAGTTCGAAGGTCAAGGACTTAA 747 0.4793 MRPVFAGNLEYDTRQSELERLFSKYGRIDRVDMKSGFAFVYYEDERDAEEAIRALDNFPFGYEKRRLSVEWARGERGRHRDGSRANQKPTKTLFVINFDPIRTRVRDIEKHFEPYGKVLHVRIRRNFAFVQFETQEDATKALECTNMSKILDRVVSVEYALRDDGERGENYDSPRRGGGYDRSPSPAYRRRPSPDYGQPHSPVYDRYNGPDRRRSPDYGRHRSPDYGRHRSPDYGRYRSPSPVRRSRT 248
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc181402g00004 248 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 2 74 IPR000504 GO:0003723
Stsc181402g00004 248 Gene3D - 1 83 IPR012677 -
Stsc181402g00004 248 Gene3D - 84 173 IPR012677 -
Stsc181402g00004 248 FunFam Serine/arginine-rich splicing factor RS31 1 84 - -
Stsc181402g00004 248 CDD RRM2_AtRSp31_like 92 161 - -
Stsc181402g00004 248 FunFam Serine/arginine-rich splicing factor RS31 85 173 - -
Stsc181402g00004 248 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 93 155 IPR000504 GO:0003723
Stsc181402g00004 248 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 4 60 IPR000504 GO:0003723
Stsc181402g00004 248 SUPERFAMILY RNA-binding domain, RBD 2 165 IPR035979 GO:0003676
Stsc181402g00004 248 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 91 162 IPR000504 GO:0003723
Stsc181402g00004 248 MobiDBLite consensus disorder prediction 206 235 - -
Stsc181402g00004 248 MobiDBLite consensus disorder prediction 165 248 - -
Stsc181402g00004 248 SMART rrm1_1 92 158 IPR000504 GO:0003723
Stsc181402g00004 248 SMART rrm1_1 3 70 IPR000504 GO:0003723
Stsc181402g00004 248 PANTHER SERINE/ARGININE RICH SPLICING FACTOR 91 240 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc181402g00004 Stsc-Chr181402 23992 26540 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc181402g00004 4 164 Eukaryotic Initiation Factors Gene Family AT1G49760 24.176 2.42e-09 55.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc181402g00004 K12893 - gmx:100797709 434.106