Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc181402g00003 ATGCCTCTCTACAGCTTCTTCTTCATCAGACCCCCAAACATTTTTTCAGGTTTTGCTTTTGTCTATTATGAGGATGAGCGTGATGCTGAAGAAGCAATTCGTGCACTTGACAATTTTCCATTTGGTTATGAAAAGCGAAGGCTCTCTGTTGAATGGGCTAGGGGTGAACGCGGACGTCATCGTGATGGCTCAAGGGCAAACCAGAAGCCAACAAAAACCCTGTTTGTGATCAACTTTGACCCAATTCGTACTAGAGTTCGTGATATAGAGAAGCACTTTGAACCTTATGGGAAGGTTCTTCATGTCCGAATTCGTAGGAACTTTGCGTTTGTGCAGTTTGAAACACAAGAAGATGCCACAAAAGCTCTTGAGTGTACAAATATGAGTAAGATACTGGACAGGGTGGTGTCTGTGGAGTATGCACTGAGGGATGATGGTGAGAGGGGTGAGAATTATGACAGTCCAAGACGTGGTGGTGGTTATGACAGATCACCTAGTCCAGCCTATCGCAGGCGGCCAAGTCCTGACTACGGTCAGCCCCACAGCCCTGTGTATGATAGGTATAATGGACCTGACAGGCGTAGGAGTCCTGATTACGGCAGGCACAGGAGTCCTGATTACGGCAGGCACAGGAGCCCTGATTATGGAAGATACCGCAGGTATGATATCGTCATATCGTGCATGCTATACTTATCTCTGGCCATTGCATGA 711 0.4698 MPLYSFFFIRPPNIFSGFAFVYYEDERDAEEAIRALDNFPFGYEKRRLSVEWARGERGRHRDGSRANQKPTKTLFVINFDPIRTRVRDIEKHFEPYGKVLHVRIRRNFAFVQFETQEDATKALECTNMSKILDRVVSVEYALRDDGERGENYDSPRRGGGYDRSPSPAYRRRPSPDYGQPHSPVYDRYNGPDRRRSPDYGRHRSPDYGRHRSPDYGRYRRYDIVISCMLYLSLAIA 236
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc181402g00003 236 SMART rrm1_1 73 139 IPR000504 GO:0003723
Stsc181402g00003 236 MobiDBLite consensus disorder prediction 146 213 - -
Stsc181402g00003 236 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 1 55 IPR000504 GO:0003723
Stsc181402g00003 236 FunFam Serine/arginine-rich splicing factor RS31 64 154 - -
Stsc181402g00003 236 Gene3D - 5 65 IPR012677 -
Stsc181402g00003 236 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 16 41 IPR000504 GO:0003723
Stsc181402g00003 236 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 74 136 IPR000504 GO:0003723
Stsc181402g00003 236 SUPERFAMILY RNA-binding domain, RBD 12 146 IPR035979 GO:0003676
Stsc181402g00003 236 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 72 143 IPR000504 GO:0003723
Stsc181402g00003 236 Gene3D - 66 154 IPR012677 -
Stsc181402g00003 236 CDD RRM2_AtRSp31_like 73 142 - -
Stsc181402g00003 236 MobiDBLite consensus disorder prediction 187 213 - -
Stsc181402g00003 236 PANTHER SERINE/ARGININE RICH SPLICING FACTOR 13 87 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc181402g00003 Stsc-Chr181402 23786 26540 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc181402g00003 17 145 Eukaryotic Initiation Factors Gene Family AT1G49760 25.874 1.13e-07 50.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc181402g00003 K12893 - gmx:100797709 369.777