Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc181402g00001 ATGAGAGTTGCAGCCTTGAAAACTTCGACTCTCCGGGTCGAGCAAAGCTCGCTAACCGGAGAAGCAATGCCAATTCTCAAAGGAACAAGTCCTGTTTTCTTGGATGATTGTGAGTTGCAGGCCAAGGAGAATATGGTCTTTGCAGGCACCACAGTTGTCAATGGGAGCTGTGTTTGCATTGTTATCACCACAGGAATGAACACCGAAATTGGGAAGATACAAAAGCAGATACATGAGGCTTCCCTGGAGGAAAGTGACACTCCTCTGAAGAAGAAATTAGATGAATTTGGTAATAGGCTCACCACTGCAATTGGTGTAGTTTGTCTTGTTGTTTGGATCATAAACTACAAGAATTTTCTTTCTTGGGATGTTGCTGATGGATTTCCCTCAAACATCAAATTTTCCTTCCAAAAGTGCACATACTATTTCAAAATCGCCGTTGCGCTCGCAGTGGCTGCAATACCAGAAGGTCTTCCTGCTGTTATCACAACTTGTTTGGCACTTGGTACAAGGAAAATGGCTCAAAAGAATGCAATTGTTAGAAAGCTTCCAAGTGTAGAAACTTTGGGATGTACTACTGTGATTTGCTCAGATAAAACTGGTACTCTTACCACAAATCAAATGTCTGTAACAGAGTTCTTTACTTTAGGAGGGAGAACCACAGCTTCTCGAGTCATTCGAGTCGAAGGCACAACTTATGATCCAAAAGATGGGGGAATTGTTGATTGGAGTTGCTTTAACATGGATGCCAACCTGCAAGCCATGGCTGAGATAAGTGCAGTTTGTAATGATGCTGGAATTTATTTCGATGGTCGCCTTTTTCGGGCCACAGGGTTGCCTACTGAAGCAGCACTAAAAGTCTTGGTTGAGAAGATGGGAGTTCCAGATACAAAGTCAAAAAACAAGATTAGTAGTTCACAAAGCAACAGTATTGTGAAGTTAGGTTGTTGTGACTGGTGGAATAGAAGATCCAAGAGGGTAGCAACATTGGAGTTTGATCGCGTTCGGAAGTCAATGAGTGTCATTGTTCGCGAACCGGATGGCGAAAATCGGCTTCTTGTAAAGGGTGCTGTTGAGAGTTTACTGGAGAGAAGCTCATATGTTCAACTAGCTGATGGATCTCTGGTTCCAATAGATGAGAAATGCAAAGAACTACTTCTACATAGACTCATGGAGATGAGTTCGAAGGGATTGCGCTGCTTGGGATTTGCTTATAAGGATGAGTTGGGAGAGTTTTCAGACTATTATGCAGATACTCATCCTTCTCATAACAAATTGCTTGATCCAGCATGCTACTCATCCATTGAAAATGATCTAGTTTTTGTTGGTGTTGTTGGTCTAAGAGACCCTCCACGCGAGGAAGTTCATAAAGCAATTGAGGATTGTAAGGAAGCTGGGATAAGAGTTATGGTGATAACCGGAGATAACAAGTCAACAGCAGAGGCAATTTGTAGGGAAATCAGTTTGTTCTCCAAAGATGAGGACATTAAAGGACAAAGCCTAACAGGTAAAGAATTCATGTCTCTTCCTCCATCAGAACAAGTTAAGATGCTGCTGAGGCCTGGAGGTAAAGTCTTTTCAAGAGCCGAGCCGAGACACAAGCAAGAAATTGTGAGGTTGCTGAAGGACATGCGGGAGATAGTTGCAATGACCGGAGATGGAGTGAACGACGCACCTGCCCTCAAGCTTGCTGATATTGGCATTGCCATGGGAATAACTGGGACAGAGGTTGCAAAAGAAGCTTCAGATATGGTGCTAGCAGATGACAATTTTAGCACAATTGTCTCAGCCGTTGCAGAAGGCCGCGCAATTTACAATAACATGAAATCATTCATCAGGTACATGATATCATCAAATGTTGGAGAAGTTATTTCAATATTCTTAACAGCTGCTCTAGGGATCCCAGAATGCATGATACCAGTGCAGCTTCTATGGGTGAACTTGGTCACAGATGGTCCACCTGCAACAGCTCTTGGTTTCAACCCTGCTGATGTTGATATCATGCGAAAGCCACCTCGGAAAAGCGATGATTCTCTCATTAGTTCTTGGGTTCTTATCCAGTATCTTGTTATTGGCTCTTATGTGGGAATTGCTACAGTTGGAATTTTTGTCTTGTGGTACACGCAACCTTCTTTTCTAGGCATAAATCTTCTTGGCGACGGCCACACAGTCGTCGAACTCTCCCAGCTTCTCAACTGGGGAGAGTGCCATTCGTGGCCTAACTTCACGGCCGCGCCATTCACAGTCAGTGGTGGCCGGATGATAACATTTTTGAATCCATGCGACTACTTCTCTGTTGGCAAAGTGAAGGCTATGACTCTGTCCCTCTCTGTATTAGTAGCAATTGAGATGTTCAATTCCCTAAATGCCCTCTCAGAAGAGAATAGCCTGAGAAAGATTCCACCTTGGAGGAACCCTTGGCTTATGGTAGCAATGTCAATATCATTTGGACTCCATTGCCTCATACTCTATACTCCATTCCTTGCTAATGTGTTTGGTGTTGTTCCACTCAGCTTGAGTGAGTGGTTTGTGGTGATTCTAATATCAGCACCTGTTATTCTCATTGATGAGATTCTTAAATGGGTGGCTAGGAATCAAAGGAGGATGAAGAAGGAGAAAGTAGCATGA 2628 0.4338 MRVAALKTSTLRVEQSSLTGEAMPILKGTSPVFLDDCELQAKENMVFAGTTVVNGSCVCIVITTGMNTEIGKIQKQIHEASLEESDTPLKKKLDEFGNRLTTAIGVVCLVVWIINYKNFLSWDVADGFPSNIKFSFQKCTYYFKIAVALAVAAIPEGLPAVITTCLALGTRKMAQKNAIVRKLPSVETLGCTTVICSDKTGTLTTNQMSVTEFFTLGGRTTASRVIRVEGTTYDPKDGGIVDWSCFNMDANLQAMAEISAVCNDAGIYFDGRLFRATGLPTEAALKVLVEKMGVPDTKSKNKISSSQSNSIVKLGCCDWWNRRSKRVATLEFDRVRKSMSVIVREPDGENRLLVKGAVESLLERSSYVQLADGSLVPIDEKCKELLLHRLMEMSSKGLRCLGFAYKDELGEFSDYYADTHPSHNKLLDPACYSSIENDLVFVGVVGLRDPPREEVHKAIEDCKEAGIRVMVITGDNKSTAEAICREISLFSKDEDIKGQSLTGKEFMSLPPSEQVKMLLRPGGKVFSRAEPRHKQEIVRLLKDMREIVAMTGDGVNDAPALKLADIGIAMGITGTEVAKEASDMVLADDNFSTIVSAVAEGRAIYNNMKSFIRYMISSNVGEVISIFLTAALGIPECMIPVQLLWVNLVTDGPPATALGFNPADVDIMRKPPRKSDDSLISSWVLIQYLVIGSYVGIATVGIFVLWYTQPSFLGINLLGDGHTVVELSQLLNWGECHSWPNFTAAPFTVSGGRMITFLNPCDYFSVGKVKAMTLSLSVLVAIEMFNSLNALSEENSLRKIPPWRNPWLMVAMSISFGLHCLILYTPFLANVFGVVPLSLSEWFVVILISAPVILIDEILKWVARNQRRMKKEKVA 875
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc181402g00001 875 SUPERFAMILY Calcium ATPase, transduction domain A 8 76 IPR008250 -
Stsc181402g00001 875 Gene3D - 206 450 IPR023299 GO:0000166
Stsc181402g00001 875 FunFam Calcium-transporting ATPase, putative 43 192 - -
Stsc181402g00001 875 PANTHER CALCIUM-TRANSPORTING ATPASE 7 871 - -
Stsc181402g00001 875 Pfam E1-E2 ATPase 9 176 - -
Stsc181402g00001 875 Gene3D - 1 80 - -
Stsc181402g00001 875 FunFam calcium-transporting ATPase, endoplasmic reticulum-type 206 450 - -
Stsc181402g00001 875 SUPERFAMILY HAD-like 194 655 IPR036412 -
Stsc181402g00001 875 FunFam ECA1 (ER-TYPE CA2+-ATPASE 1) 615 870 - -
Stsc181402g00001 875 Gene3D - 193 596 IPR023214 -
Stsc181402g00001 875 SFLD Haloacid Dehalogenase 177 604 - -
Stsc181402g00001 875 SUPERFAMILY Calcium ATPase, transmembrane domain M 71 866 IPR023298 -
Stsc181402g00001 875 Pfam Cation transporting ATPase, C-terminus 636 862 IPR006068 -
Stsc181402g00001 875 Pfam haloacid dehalogenase-like hydrolase 193 565 - -
Stsc181402g00001 875 Gene3D - 81 864 - -
Stsc181402g00001 875 ProSitePatterns E1-E2 ATPases phosphorylation site. 198 204 IPR018303 -
Stsc181402g00001 875 PRINTS P-type cation-transporting ATPase superfamily signature 196 210 - -
Stsc181402g00001 875 PRINTS P-type cation-transporting ATPase superfamily signature 14 28 - -
Stsc181402g00001 875 PRINTS P-type cation-transporting ATPase superfamily signature 465 475 - -
Stsc181402g00001 875 PRINTS P-type cation-transporting ATPase superfamily signature 551 570 - -
Stsc181402g00001 875 PRINTS P-type cation-transporting ATPase superfamily signature 575 587 - -
Stsc181402g00001 875 PRINTS P-type cation-transporting ATPase superfamily signature 443 454 - -
Stsc181402g00001 875 NCBIfam HAD-IC family P-type ATPase 525 636 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Stsc181402g00001 875 NCBIfam HAD-IC family P-type ATPase 134 218 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Stsc181402g00001 875 SFLD p-type atpase 177 604 IPR044492 -
Stsc181402g00001 875 PRINTS Sodium/potassium-transporting ATPase signature 804 828 - -
Stsc181402g00001 875 PRINTS Sodium/potassium-transporting ATPase signature 189 210 - -
Stsc181402g00001 875 FunFam Calcium-transporting P-type ATPase, putative 445 596 - -
Stsc181402g00001 875 SUPERFAMILY Metal cation-transporting ATPase, ATP-binding domain N 203 447 IPR023299 GO:0000166
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc181402g00001 Stsc-Chr181402 10927 14867 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc181402g00001 1 874 Primary Pumps ATPases(2) AT4G00900 79.592 0.0 1441
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc181402g00001 K01537 - gmx:100792952 1558.89