Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc181401g00003 ATGTTCTCGGGTTCCCAATTCGATGCCACCACCGCCTTCTCCGGCGGCGGTTTCATGGCCTCCCAATCCACCAACCTCAGTGATTCATCCCCTGCACCCGCTAAAAGCCGTGAAACCCAGGGTTTGATTCCGGTGACAGTGAAGCAGATAAGTGAAGCTTCTCATTCTGGTGATGAAAAGTCGAATTTTGTGATTAACGGTATTGATGTGAACAATGTAACATTGGTTGGGATGATGTTTGAGAAAACTGAGAGAACCACTGATGTTAATTTTGTTTTAGATGATGGAACTGGACGAATCAAATGCCGAAGATGGGTCAATGAGAGTTTTGACACCAAGGAAATGGAAGAAGTACAGGATGGTATGTATGTTCGTGTTTATGGTCACTTGAAAAGCTTTCAAGGTGTGAAGCAGCTTGTTGCCTTCTCAGTCAGGCCTGTGACAAATTTTGATGAAATCTCATTTCACTTTATCGATTGCATACATAACCACCTCCACTCCAAAATAAAGGTTGAAGGAATTACTCATGCAAATCCTTCATCAGGCTCATCTTTGATCGCTCCTGTCAAAAATGCATCAAATGGTTCACAGGAACCGTCATCAAATCCAGGGTATGCTCAGTATAGTGTGGATGGACTCAAGGATTGTGATAAATTGGTTATTGACTATCTGCAACAACATTCAGACATGTCGGATGAACGAGGAATACATGTCGATGAACTATCTCGGGAACTTAAGCTTCCAATGGACAAGATCATGTTGGCTTTAAAGACTCTTGGAGATGATGGTTTAGTGTACTCCACCATAGATGACTACCATTACAAACAAGCTTGA 834 0.4245 MFSGSQFDATTAFSGGGFMASQSTNLSDSSPAPAKSRETQGLIPVTVKQISEASHSGDEKSNFVINGIDVNNVTLVGMMFEKTERTTDVNFVLDDGTGRIKCRRWVNESFDTKEMEEVQDGMYVRVYGHLKSFQGVKQLVAFSVRPVTNFDEISFHFIDCIHNHLHSKIKVEGITHANPSSGSSLIAPVKNASNGSQEPSSNPGYAQYSVDGLKDCDKLVIDYLQQHSDMSDERGIHVDELSRELKLPMDKIMLALKTLGDDGLVYSTIDDYHYKQA 277
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc181401g00003 277 CDD RPA2_DBD_D 72 165 - -
Stsc181401g00003 277 SUPERFAMILY Nucleic acid-binding proteins 42 166 IPR012340 -
Stsc181401g00003 277 PANTHER REPLICATION PROTEIN A-RELATED 6 275 IPR040260 -
Stsc181401g00003 277 Pfam OB-fold nucleic acid binding domain 73 145 IPR004365 GO:0003676
Stsc181401g00003 277 MobiDBLite consensus disorder prediction 22 41 - -
Stsc181401g00003 277 Pfam Replication protein A C terminal 185 271 IPR014892 -
Stsc181401g00003 277 MobiDBLite consensus disorder prediction 185 207 - -
Stsc181401g00003 277 Gene3D - 207 277 IPR036388 -
Stsc181401g00003 277 FunFam replication protein A 32 kDa subunit A-like 35 169 - -
Stsc181401g00003 277 Gene3D - 38 169 IPR012340 -
Stsc181401g00003 277 SUPERFAMILY "Winged helix" DNA-binding domain 211 275 IPR036390 -
Stsc181401g00003 277 FunFam Replication protein A 32 kDa subunit 208 277 - -
Stsc181401g00003 277 PIRSF RPA32 1 277 IPR014646 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc181401g00003 Stsc-Chr181401 13417 17380 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc181401g00003 1 275 Core DNA Replication Machinery Family AT2G24490 47.518 3.13e-92 272
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc181401g00003 K10739 - gmx:100802512 466.848