Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc181400g00003 ATGTCGAACACCGTGGTTCCAGAATCGCGATTGAAGAAGCAAAAGAGGAGCGAGGAGTGGGCCCTCGCTAAAGCACAGCAGCTCCAAGCGGCCAAGGAAAACCGCCTCCAAACTCGGAAGTTGATTTTCACCAGAGCCAAACAGTACTCTCAGGAGTACGCTGAGCAGGAGAAGGAGCTAATACGGTTGAAACGTGAGGCCAAGCTTAAAGGAGGCTTTTATGTCGATCCTGAAGCTAAACTCTTGTTCATCGTCAGGATCCGAGGTATCAATGCTATGCACCCTCAGACAAGGAAGATCTTGCAGCTGCTCCGGTTGCGGCAGATTTTTAATGGGGTGTTCGTCAAAGTAAACAAAGCAACTGTCAATATGCTTCACCGGGTAGAACCGTATGTAACATATGGGTATCCTAACCTTAAAAGTGTCAGAGAATTAATTTATAAGAGAGGCTATGGAAAAGTTGATAAGCAGAGGATTCCGCTCACAGACAACTCCATTGTCGAAAAGGCGTTGGGGAAGCATGGAATAATATGCGTTGAAGATCTGATCCATGAAATAATGACTGTTGGTCCTAACTTCCGAGAAGCCAACAACTTCTTATGGCCCTTCAAGCTGAAGGCGCCACTCGGTGGTTTGAAAAAAAAAAGGAATAATTATGTAGAAGGTGGCGACTCCGGAAATAGGGAAGGGTACATAAATGAGATTATTAGAAGGATGAATTAA 723 0.4509 MSNTVVPESRLKKQKRSEEWALAKAQQLQAAKENRLQTRKLIFTRAKQYSQEYAEQEKELIRLKREAKLKGGFYVDPEAKLLFIVRIRGINAMHPQTRKILQLLRLRQIFNGVFVKVNKATVNMLHRVEPYVTYGYPNLKSVRELIYKRGYGKVDKQRIPLTDNSIVEKALGKHGIICVEDLIHEIMTVGPNFREANNFLWPFKLKAPLGGLKKKRNNYVEGGDSGNREGYINEIIRRMN 240
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc181400g00003 240 Pfam Ribosomal L30 N-terminal domain 6 77 IPR012988 -
Stsc181400g00003 240 CDD Ribosomal_L7_archeal_euk 81 240 IPR035808 -
Stsc181400g00003 240 NCBIfam 60S ribosomal protein uL30 7 240 IPR005998 GO:0000463|GO:0003735|GO:0022625
Stsc181400g00003 240 ProSitePatterns Ribosomal protein L30 signature. 100 132 IPR018038 -
Stsc181400g00003 240 FunFam 60S ribosomal protein L7 186 240 - -
Stsc181400g00003 240 Gene3D - 81 185 IPR036919 -
Stsc181400g00003 240 Gene3D - 186 240 IPR036919 -
Stsc181400g00003 240 PANTHER 60S RIBOSOMAL PROTEIN L7 4 240 IPR039699 -
Stsc181400g00003 240 FunFam 60S ribosomal protein L7 81 185 - -
Stsc181400g00003 240 SUPERFAMILY Ribosomal protein L30p/L7e 81 240 IPR036919 -
Stsc181400g00003 240 Pfam Ribosomal protein L30p/L7e 82 132 IPR016082 -
Stsc181400g00003 240 Coils Coil 46 66 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc181400g00003 Stsc-Chr181400 55159 57073 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc181400g00003 2 240 Cytoplasmic Ribosomal Protein Gene Family AT3G13580 80.335 2.59e-146 406
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc181400g00003 K02937 - sly:101260624 388.267