Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc181399g00011 ATGAACGACAACATGAACGACATTAACAACTACTCCTCCATTTCTGCTCATTCAGGTTGTTCTCCCGACATAGATCATCCATTCTTGGTTGCGGTTGATAATAGTAGTGTTGGTGTTGAGTTTGCAGCTTCATCTTCTTCTTCATCATCATCTCTTACTCGGATACGCAAACCTAGAAAGAAGAAGAGCGCCAAATTGATAAGCATAATGGAGGAAGAAGGGGTGGTGAAAGGAGGTTATAATAAGGGTGGTGGTGGATACAAGAAGATTGATACGGCGGCGGCGGAGGAGGCACCAAAGATCGCCCGTCCATGCACCGAGTGTGGCAAGAAATTCTGGTCATGGAAGGCTCTATTCGGCCACATGCGCTGCCACCCTGAGCGCGAGTGGCGAGGAATCAATCCTCCTCCGAATCTCGTCAGATCAAAACCACCATCTCAAGAAGAAGACAGGACTCGCGGCCTCACGCCGGAGGATCACGAGGTTGCCACGTGTCTGCTGTTGCTAGCGAGGAGTAGTGGGAGGGAGAAGGCTAAAAGAGAAGAAGATGAGTCCAACAATAAAGTGGAGAACAATAATGTGGAGTGTGGAATCAATTCTCATTGCAAAGAGGAACAGGAGGAGCGGTTTGAGTGCTCCAGTTGCAAGAAAGTGTTTGGATCTCATCAAGCACTTGGTGGGCATAGAGCAAGTCACAAGAACGTCAAGGGATGCTTCGCCATCACCAGAACCACCGCCGAGGGAGGAGGAGACCACCACCACCATGATCATCATTTACTAAACATCAACCTCCTCACGCATGGTGACAACGACGCCGTTGCGGGAGGAGGAGGGCACAAGTGTAGCATATGTATGAAGGTGTTCTCCACAGGACAGGCTCTTGGTGGACACAAGAGGTGTCATTGGGAGAAAGCTGAGAGTGAAAGTGGTAATGATGGATGTTCAACGCTAACACTCCCTCTCCCTGTTGACCTGAATTTGCCTGCTCCTATTGATCAACAATACTACCATTGCTCTTCTTCATCAACACTCACTTTGGATTTGAGGTTGGGTCTTTAA 1059 0.4873 MNDNMNDINNYSSISAHSGCSPDIDHPFLVAVDNSSVGVEFAASSSSSSSSLTRIRKPRKKKSAKLISIMEEEGVVKGGYNKGGGGYKKIDTAAAEEAPKIARPCTECGKKFWSWKALFGHMRCHPEREWRGINPPPNLVRSKPPSQEEDRTRGLTPEDHEVATCLLLLARSSGREKAKREEDESNNKVENNNVECGINSHCKEEQEERFECSSCKKVFGSHQALGGHRASHKNVKGCFAITRTTAEGGGDHHHHDHHLLNINLLTHGDNDAVAGGGGHKCSICMKVFSTGQALGGHKRCHWEKAESESGNDGCSTLTLPLPVDLNLPAPIDQQYYHCSSSSTLTLDLRLGL 352
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc181399g00011 352 ProSitePatterns Zinc finger C2H2 type domain signature. 281 301 IPR013087 -
Stsc181399g00011 352 SUPERFAMILY beta-beta-alpha zinc fingers 104 232 IPR036236 -
Stsc181399g00011 352 ProSitePatterns Zinc finger C2H2 type domain signature. 212 232 IPR013087 -
Stsc181399g00011 352 Pfam C2H2-type zinc finger 279 303 - -
Stsc181399g00011 352 Pfam C2H2-type zinc finger 104 127 - -
Stsc181399g00011 352 Pfam C2H2-type zinc finger 209 233 - -
Stsc181399g00011 352 ProSiteProfiles Zinc finger C2H2 type domain profile. 103 130 IPR013087 -
Stsc181399g00011 352 Coils Coil 175 195 - -
Stsc181399g00011 352 Gene3D Classic Zinc Finger 207 301 - -
Stsc181399g00011 352 MobiDBLite consensus disorder prediction 133 155 - -
Stsc181399g00011 352 SUPERFAMILY beta-beta-alpha zinc fingers 278 304 IPR036236 -
Stsc181399g00011 352 ProSiteProfiles Zinc finger C2H2 type domain profile. 210 237 IPR013087 -
Stsc181399g00011 352 ProSitePatterns Zinc finger C2H2 type domain signature. 105 125 IPR013087 -
Stsc181399g00011 352 PANTHER ZINC FINGER PROTEIN ZAT2-RELATED 42 352 - -
Stsc181399g00011 352 SMART c2h2final6 210 232 IPR013087 -
Stsc181399g00011 352 SMART c2h2final6 279 301 IPR013087 -
Stsc181399g00011 352 SMART c2h2final6 103 125 IPR013087 -
Stsc181399g00011 352 ProSiteProfiles Zinc finger C2H2 type domain profile. 279 306 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc181399g00011 Stsc-Chr181399 65322 66380 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc181399g00011 98 352 C2H2 Transcription Factor Family AT4G35280 47.547 3.17e-69 216
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Stsc181399g00011 zf-C2H2_6 4.7e-11 CL0361