Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc181398g00010 ATGTCTTCCAACGACATGATGGATTTCCCATTACCACCCTCACCACCACCAACCCCTCCTCCTCAACTTCACCTTCAACCTCTCAACCTAGACAACCTTAAAGCCCTCAAAATCCTTGGCAAAGGTGCCATGGGCACCGTCTTCCTCGTCCAAGACACCTCTTCCACCTTCTTCGCCCTCAAGGTCGTCGAGAAAACCACCCTCCACGGCAAGCTTGACGCCGACCGCCGCGCCCGCTGGGAAATCGAAGTCCTCTCCAAGCTCTCCGGCCACCCCTTCCTCCCTTCCCTTCTCGGCTCCCTCGACACCCCGGAGTTCCTCGCCTGGGCCCTACCTTACTGCCCCGGCGGGGACCTCAACCGCCTCCGCTACCGCCAGACCGACCGCGTGTTCTCCCCGTGCGTCATCCGGTTCTACCTGGCTGAAATCCTGTGCGCCCTCCACCACCTTCATTCCCTCGGTATCGCTTATCGTGACCTTAAACCAGAAAATGTCCTTATCCAACAAAACGGTCACGTGACTCTCACGGACTTCGACCTCTCACGCAAACTCACGCGCAAAACCGTTGCAACAACCTCTCAAAGCGATGTGGCAGTTGCAACTGACATTACCAACAAAAATAACAGCATTCCTCCCACGGATCCCAACAAGATTCCATCAGAACCTCCTCATCGAAGGAGACACCGCCGGAACTTCACACGGTGGTTCCCTCTCCAAACGCCGGATGCAGTTCGTAAGAACGCCTTGAAGAAAGTGAAGTCCGCCAGAGTCAGTCCGGTGAGTCGACGCAGGACGAGTTTCGTTGGCGGCGGAGAGAGGTCCAACTCGTTCGTCGGTACCGAGGAGTACGTGGCACCGGAGGTGGTGCGCGGTGAGGGACACGATTTCGCGGTGGATTGGTGGGCGCTGGGGATTCTGGCGTACGAGATGATGTACGGTACGACGCCGTTTAAGGGGAAGAACCGCAAGGATACGTTCCGGAATGTGTTGGTGAAGTCGCCGGAGTTCGTTGGAAAAAGGTGGTCGCTGACGGATCTCATCGAGAAGCTTCTGGAGAAGGATCCGACGGCGAGATTGGGTTACACTCGCGGCGCCGACGAGATCAAGGAGCACAAGTTCTTTCATGGTGTGAGGTGGGACATGTTGACGGAGGTGGTGCGACCGCCGTTCATTCCGGCCAGGAACGACCCCGGTGCCGGTGAATCGATGGAGAGTTTGATAGGTGGAGAGGGCGGCGTGAACATTAGGGATTATTTTCAGAAGTTGCGGTTGCCGCCGTCATTGCCGCCGTCGCCGTTGCACTCGCCGTCCGGCAAGTTCAAGAGGAATGTTTCTCTATCGGAATTCTAA 1350 0.5689 MSSNDMMDFPLPPSPPPTPPPQLHLQPLNLDNLKALKILGKGAMGTVFLVQDTSSTFFALKVVEKTTLHGKLDADRRARWEIEVLSKLSGHPFLPSLLGSLDTPEFLAWALPYCPGGDLNRLRYRQTDRVFSPCVIRFYLAEILCALHHLHSLGIAYRDLKPENVLIQQNGHVTLTDFDLSRKLTRKTVATTSQSDVAVATDITNKNNSIPPTDPNKIPSEPPHRRRHRRNFTRWFPLQTPDAVRKNALKKVKSARVSPVSRRRTSFVGGGERSNSFVGTEEYVAPEVVRGEGHDFAVDWWALGILAYEMMYGTTPFKGKNRKDTFRNVLVKSPEFVGKRWSLTDLIEKLLEKDPTARLGYTRGADEIKEHKFFHGVRWDMLTEVVRPPFIPARNDPGAGESMESLIGGEGGVNIRDYFQKLRLPPSLPPSPLHSPSGKFKRNVSLSEF 449
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc181398g00010 449 FunFam Serine/threonine-protein kinase OXI1 118 186 - -
Stsc181398g00010 449 MobiDBLite consensus disorder prediction 428 449 - -
Stsc181398g00010 449 Gene3D Transferase(Phosphotransferase) domain 1 269 397 - -
Stsc181398g00010 449 ProSiteProfiles Protein kinase domain profile. 33 374 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc181398g00010 449 Gene3D Transferase(Phosphotransferase) domain 1 28 201 - -
Stsc181398g00010 449 SUPERFAMILY Protein kinase-like (PK-like) 15 392 IPR011009 -
Stsc181398g00010 449 Pfam Protein kinase domain 271 374 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc181398g00010 449 Pfam Protein kinase domain 35 192 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc181398g00010 449 ProSitePatterns Protein kinases ATP-binding region signature. 39 61 IPR017441 GO:0005524
Stsc181398g00010 449 FunFam Serine/threonine-protein kinase OXI1 272 393 - -
Stsc181398g00010 449 MobiDBLite consensus disorder prediction 204 226 - -
Stsc181398g00010 449 MobiDBLite consensus disorder prediction 1 22 - -
Stsc181398g00010 449 SMART serkin_6 33 374 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc181398g00010 449 ProSitePatterns Serine/Threonine protein kinases active-site signature. 155 167 IPR008271 GO:0004672|GO:0006468
Stsc181398g00010 449 PANTHER FLIPPASE KINASE 1-RELATED 28 394 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc181398g00010 Stsc-Chr181398 59932 61650 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc181398g00010 28 449 AGC Kinase Gene Family AT3G20830 57.275 7.61e-156 446
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK AGC_RSK-2 Stsc181398g00010 Pkinase 7.6e-33 CL0016