Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc181398g00009 ATGAACTCATCATCTTCAAACAATAACTGGCTTTCATTCCCCCTTTCACCAACTCATCCTCCTCCTCAATATCATCAATTCCCTCTTGGCTTTGTCAATGACACCATGGAAAGCCCTTTCCAAAATCATGATTGGAATGTGATAAATGGAGAGAGCAGCAATAACAATAATGATCAAGCAGTTCCAAAGGTAGCTGATTTCCTTGGTGTAACCAAGGCAGAGGAAGATTCATCATCATCAGATCTTGTTGCCCTCACACAAATCCATCAGCATTCATCATCACATGATCAATACCTCTCCACTCTCTTGCCCTTGCAGCACCATCAAAACACCACAACACTTGGCAACATCAACAACTATGAACAACATCAGCAGTGTCACACAAACAATAATAATCTGCAAGCACTGACATTGTCCATGGCAAGTGGCAGCGATAATAATAACAATAATAATAATAAGGATTCAACAACAACAACAAGCTGTGACAATAACAGCAGCAGCACCAACATCACTGTTGAAGCCCCACCTGCTAATAACAGAAGAACTCTAGATACCTTTGGCCAGAGAACTTCAATCTACCGTGGAGTAACAAGGCATAGATGGACTGGAAGATATGAAGCTCATCTTTGGGATAATAGCTGTAGAAGGGAAGGACAATCAAGAAAGGGTCGCCAAGGTGGATATGATAAAGAAGATAAAGCAGCTAGGGCTTATGATTTGGCTGCATTGAAGTACTGGGGAACATCCACTACTACCAACTTTCCTATCAGCAACTATGAGAAGGAATTGGAAGAAATGAAACACATGACAAGACAAGAATTTGTAGCCGCCATAAGAAGGAAAAGTAGTGGATTCTCCAGAGGTGCATCAATGTATCGTGGAGTTACAAGGCATCACCAACATGGGAGATGGCAAGCAAGGATTGGAAGGGTTGCAGGAAACAAAGATCTTTATCTAGGAACATTTAGTACGGAAGAAGAGGCAGCAGAAGCTTATGACATAGCAGCCATAAAGTTCAGAGGCCTTAACGCCGTTACAAACTTCGACATGAGCCGTTACGACGTCAAAGCCATTCTTGAAAGCAATGCTCTCCCAATTGGAGGCGGTGCTGCTAAGAGATTGAAAGAAGCACAAGCATTGGAATCTTCTAGAAAACGAGAAGAGTTGCTTGCACTTGCAGCAGCAGCAGGAGGAACCTCTTCAGCTTCTTTTCATCATCATAACTATGGTGGAGTTGGTGCCTCTTCTTCTTCTTCTGCAAGATTCCCTCTCATGCATCATCAAGAATTTCAGATTCAACCATTGTTAACCCTACAGAACCACCACCAAGATCATTATCAATTCATGCATCATCATCATCATCAGGATCCTTCTTCTTCTTCGACTCCTTCTCCTTCGTCTTCGTCGTCTCTTCATCAGAGCTATCTGCAAACGCAGATTCAGTTGCACCAACAGAATGCTCAGTTTTACAACAATTACCTTCATGGAATGATGAACATTGGTGGTTCTTCTTCTCCTTCTTCTTTTTCGCTCATGGATAACAATAATAATAATAACATGCTTGCTGGTTTGGGTTCGAATTCTTCTTCCGGTAACGTAGTGGGATCTTCTTCAGAGGAACTTGGCTTGGTTAAGGTTGATTATGATATGAATCCCGGCGGTTATGGCGGTTGGCCAGGGACCGCCGAGACAGCGTCGGAGTCCTTGCAGGGACAAAATGGTGGTGTTTTTACAATGTGGAATGATTTGTCAAACTAA 1758 0.4261 MNSSSSNNNWLSFPLSPTHPPPQYHQFPLGFVNDTMESPFQNHDWNVINGESSNNNNDQAVPKVADFLGVTKAEEDSSSSDLVALTQIHQHSSSHDQYLSTLLPLQHHQNTTTLGNINNYEQHQQCHTNNNNLQALTLSMASGSDNNNNNNNKDSTTTTSCDNNSSSTNITVEAPPANNRRTLDTFGQRTSIYRGVTRHRWTGRYEAHLWDNSCRREGQSRKGRQGGYDKEDKAARAYDLAALKYWGTSTTTNFPISNYEKELEEMKHMTRQEFVAAIRRKSSGFSRGASMYRGVTRHHQHGRWQARIGRVAGNKDLYLGTFSTEEEAAEAYDIAAIKFRGLNAVTNFDMSRYDVKAILESNALPIGGGAAKRLKEAQALESSRKREELLALAAAAGGTSSASFHHHNYGGVGASSSSSARFPLMHHQEFQIQPLLTLQNHHQDHYQFMHHHHHQDPSSSSTPSPSSSSSLHQSYLQTQIQLHQQNAQFYNNYLHGMMNIGGSSSPSSFSLMDNNNNNNMLAGLGSNSSSGNVVGSSSEELGLVKVDYDMNPGGYGGWPGTAETASESLQGQNGGVFTMWNDLSN 585
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc181398g00009 585 MobiDBLite consensus disorder prediction 140 182 - -
Stsc181398g00009 585 Gene3D AP2/ERF domain 291 351 IPR036955 GO:0003700|GO:0006355
Stsc181398g00009 585 Gene3D AP2/ERF domain 192 257 IPR036955 GO:0003700|GO:0006355
Stsc181398g00009 585 PRINTS Ethylene responsive element binding protein signature 193 204 IPR001471 GO:0003700|GO:0006355
Stsc181398g00009 585 PRINTS Ethylene responsive element binding protein signature 331 351 IPR001471 GO:0003700|GO:0006355
Stsc181398g00009 585 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 63 455 - -
Stsc181398g00009 585 MobiDBLite consensus disorder prediction 448 474 - -
Stsc181398g00009 585 Pfam AP2 domain 292 341 IPR001471 GO:0003700|GO:0006355
Stsc181398g00009 585 Pfam AP2 domain 192 247 IPR001471 GO:0003700|GO:0006355
Stsc181398g00009 585 SMART rav1_2 291 355 IPR001471 GO:0003700|GO:0006355
Stsc181398g00009 585 SMART rav1_2 192 261 IPR001471 GO:0003700|GO:0006355
Stsc181398g00009 585 CDD AP2 290 351 IPR001471 GO:0003700|GO:0006355
Stsc181398g00009 585 ProSiteProfiles AP2/ERF domain profile. 192 255 IPR001471 GO:0003700|GO:0006355
Stsc181398g00009 585 SUPERFAMILY DNA-binding domain 191 257 IPR016177 GO:0003677
Stsc181398g00009 585 MobiDBLite consensus disorder prediction 458 474 - -
Stsc181398g00009 585 SUPERFAMILY DNA-binding domain 290 351 IPR016177 GO:0003677
Stsc181398g00009 585 CDD AP2 191 257 IPR001471 GO:0003700|GO:0006355
Stsc181398g00009 585 ProSiteProfiles AP2/ERF domain profile. 291 349 IPR001471 GO:0003700|GO:0006355
Stsc181398g00009 585 FunFam AP2-like ethylene-responsive transcription factor 290 351 - -
Stsc181398g00009 585 FunFam AP2-like ethylene-responsive transcription factor ANT 191 257 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc181398g00009 Stsc-Chr181398 45215 47750 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc181398g00009 8 582 AP2-EREBP Transcription Factor Family AT1G51190 57.398 0.0 583
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-AP2 Stsc181398g00009 AP2 1.8e-08 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc181398g00009 K09285 - gmx:100788471 618.231