Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc181398g00008 ATGGACCATGACAAAATTGGTTGCCAAGCTCCCCCTGAAGGTCCTTCATTGTGCATCAACAACTGCGGATTTTTTGGTAGCGCAGCTACGTTGAACATGTGTTCTAAGTGCCACAAGGACATGATGCTGAAAGAGGAGCAAGCCAAGCTTGCAGTATCGTCCATTGGGAATATTATTAATGGGTCATCAAGCAGCAGTGGAAATGATCTTCTTGTTGCTACTACCAATGTGGATATCTCAGTCAATTCAGTAGAGCCTAAAACTATCTCTGTGCAACCTCTATTTGGTTCAGGTTCTGAGGAGAGTGGTGAGGCAAAGCCGAAAGACGGTCCTAAACGTTGTAATAGCTGCAACAAACGGGTTGGTTTGACAGGGTTCAATTGTCGGTGTGGTAGCCTTTTCTGCTCGGTACATCGCTACTCAGACAAACATAACTGCCCGTTTGATTACCGCACTGCTGGACAGGATGCCATAGCTAAAGCAAACCCAATTGTCAAGGCTGAGAAGCTTGACAAGATTTAA 522 0.454 MDHDKIGCQAPPEGPSLCINNCGFFGSAATLNMCSKCHKDMMLKEEQAKLAVSSIGNIINGSSSSSGNDLLVATTNVDISVNSVEPKTISVQPLFGSGSEESGEAKPKDGPKRCNSCNKRVGLTGFNCRCGSLFCSVHRYSDKHNCPFDYRTAGQDAIAKANPIVKAEKLDKI 173
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc181398g00008 173 SUPERFAMILY AN1-like Zinc finger 99 168 IPR035896 -
Stsc181398g00008 173 ProSiteProfiles Zinc finger AN1-type profile. 108 154 IPR000058 GO:0008270
Stsc181398g00008 173 ProSiteProfiles Zinc finger A20-type profile. 12 46 IPR002653 GO:0003677|GO:0008270
Stsc181398g00008 173 MobiDBLite consensus disorder prediction 92 112 - -
Stsc181398g00008 173 Pfam A20-like zinc finger 16 39 IPR002653 GO:0003677|GO:0008270
Stsc181398g00008 173 Pfam AN1-like Zinc finger 114 150 IPR000058 GO:0008270
Stsc181398g00008 173 Gene3D - 96 169 IPR035896 -
Stsc181398g00008 173 SMART A20_3 15 39 IPR002653 GO:0003677|GO:0008270
Stsc181398g00008 173 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 17 53 - -
Stsc181398g00008 173 FunFam Zinc finger AN1-type containing 6 89 169 - -
Stsc181398g00008 173 SMART AN1_Zf_4 114 151 IPR000058 GO:0008270
Stsc181398g00008 173 PANTHER AN1-TYPE ZINC FINGER PROTEIN 13 173 - -
Stsc181398g00008 173 Gene3D - 8 66 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc181398g00008 Stsc-Chr181398 40495 43115 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc181398g00008 8 173 C2H2 Transcription Factor Family AT3G52800 41.040 3.60e-37 124
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc181398g00008 - - qsa:O6P43_028135 286.96