Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc181398g00005 ATGGTGGTCATGGCCGATTCCTACAGCAACTCCAATAATAATCATGATCATCACTACAATACTAACAGCAATCTTTTCTTATTCGATCTCAATTATTCTCCATCTCAATCTCTTCTCTCTTCTCCTTCTCCTCCTCCTTCTTCTAATTCCTTCAATAACCAACAACAACCATTCTATTATTTTCATCATCACTTCCAACAAAACTCTCCTCCTCCACCAATTAGAGAAGAAGAAGCCCTTCCCCTCCTTCACCTAAGCCCCACAACAACAAGACACGATGAACAAGCTGAAGTAGATCTTGAATCTTCATTTTGTGCCATGGAAGTGGACAAGAACAACAATAATAAAGAGAAATTAGAAAGTAGTGTGAAGGTGGGTTTACACTTAGGGCTTGAAAACACAGGAGGTTCAAGTAGCATAATTTACTCATCATCATCATCATCACAGAAACAAGAACAAGAAGAAGAAAACATGAGCGCTTCTGAGTATGGTGTATTGTCAAATGGAATAATAAACAGAGGACAATATTGGATCCCAACACCAACTCAGATCCTCATTGGTCCTACACAGTTCGCATGCCCCCTTTGCTTCAAGACCTTCAACAGATACAATAACATGCAGATGCATATGTGGGGGCATGGATCTCAATATAGAAAGGGAGCAGAATCTCTAAGGGGAACACAACCAACAGCAATGTTGAAACTGCCATGTTATTGCTGTGCACCAGGTTGCAAGAACAACATAGACCACCCAAGAGCTAAGCCTCTCAAAGACTTCAGAACCCTTCAAACTCATTACAAGAGAAAGCATGGTCTTAAACCCTTCTCTTGTAGGAAGTGTTCCAAGGCATTTGCTGTTAGAGGTGATTGGAGGACTCATGAGAAGAATTGTGGCAAGCGTTGGTATTGTTCTTGTGGCTCTGATTTTAAGCACAAGAGATCCCTTAAGGATCATATCAAGGCTTTTGGAAATGCACACAAACCCTATGGGATTGACCATCATCATCATTGTCTTCTTCTTGATCAAGATCATAATAATCATAATAATGGAGCTGCCTCTGAAGTTGAAGAAAATGATTCATTCAACTCCTAA 1092 0.402 MVVMADSYSNSNNNHDHHYNTNSNLFLFDLNYSPSQSLLSSPSPPPSSNSFNNQQQPFYYFHHHFQQNSPPPPIREEEALPLLHLSPTTTRHDEQAEVDLESSFCAMEVDKNNNNKEKLESSVKVGLHLGLENTGGSSSIIYSSSSSSQKQEQEEENMSASEYGVLSNGIINRGQYWIPTPTQILIGPTQFACPLCFKTFNRYNNMQMHMWGHGSQYRKGAESLRGTQPTAMLKLPCYCCAPGCKNNIDHPRAKPLKDFRTLQTHYKRKHGLKPFSCRKCSKAFAVRGDWRTHEKNCGKRWYCSCGSDFKHKRSLKDHIKAFGNAHKPYGIDHHHHCLLLDQDHNNHNNGAASEVEENDSFNS 363
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc181398g00005 363 ProSiteProfiles Zinc finger C2H2 type domain profile. 191 218 IPR013087 -
Stsc181398g00005 363 Gene3D Classic Zinc Finger 252 333 - -
Stsc181398g00005 363 MobiDBLite consensus disorder prediction 138 160 - -
Stsc181398g00005 363 FunFam Zinc finger protein WIP2 244 326 - -
Stsc181398g00005 363 SUPERFAMILY beta-beta-alpha zinc fingers 257 295 IPR036236 -
Stsc181398g00005 363 ProSitePatterns Zinc finger C2H2 type domain signature. 193 213 IPR013087 -
Stsc181398g00005 363 PANTHER ZINC FINGER PROTEIN WIP2 41 355 IPR043584 GO:0003700|GO:0010468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc181398g00005 Stsc-Chr181398 22019 23922 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc181398g00005 30 357 C2H2 Transcription Factor Family AT1G51220 58.284 2.45e-124 359
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Stsc181398g00005 None None None