Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc181396g00006 ATGGCAGCTTCTGTGGAAAGCCGTCAATTCACCGCCGTAAACGGCGTCGTACGCACTCCCCCAATGATCAAACCACCGCTTCCTTCACCAAATCTCGACGATTCAGATTCCTCCTCCAGCGACGACGAAGAAAACGACTACGTTTCGACCCTACGCGCTCTCATCCACAAATCCAACGCCGAATTAGAGCCATCCATCCTCGACGCTCGCGACGATGGAACTTCCGATTCGTGGGTCTACCGTAATGCTTCCATGGTCCGCCTCACAGGGAAGCACCCCTTCAACGCGGAAGCCCCTTTGCCCCGCCTCATGCACCACGGTTTCATCACACCTGTCCCACTCCACTACGTTCGAAACCACGGTCCAGTCCCCAAAACTCGCTGGGAGGATTGGACCATAGAAATATCTGGACTGGTTAACAAGCCAGTCCAGTTAATCATGGACCGGCTGGTTCGTGAGTTCCCAAATCGCGAGTTCCCCGTGACGCTAGTCTGTGCGGGAAACCGCAGAAGGGAACAGAACATGGTCCGGCAGAGCATTGGCTTCAACTGGGGCTCTGCCGGCGTGTCGACCTCCGTGTGGCGCGGTGTGCCACTGCGTCACGTGCTTCGGAGATGCGGGATCATGTCACGTGGAAAGGGGGCTCTGCACGTTTGGTTTGAGGGAGAGGAAGATCTTCCTGGTGGGGGAGGGTCCAAGTATGGAACAAGTATAAAGAGGGAGGTGGCTATGGACCCTTCAAGGGATATTATTCTGGCTTATATGCAAAATGGGGAGGTTCTAAAACCGGATCATGGGTACCCTTTGAGGGTGATTATACCTGGTTTCATTGGGGGACGCATGGTGAAGTGGCTCAGGAAGATTGTGGTAAGTTCTAAAGAGTGTGATAGTCACTACCATTTTAAGGATAATAGAGTCCTTCCATCGCATGTTGATGCCGAGCTTGCCAATGAAGAAGGTTGGTGGTACAAACCAGAGTATATAATCAATGAGCTGAACATAAATTCAGTGATAACTACGCCTTGTCACGAGGAGATCTTGCCCATCAACTCTTGGACTACGCAGCGGCCTTATACTTTGAGAGGCTATGCATACTCCGGAGGTGGAAGGAAAGTGACACGTGTTGAGATAACATTGGACGGTGGAGAAACTTGGCAGGTATGCGAGTTGAACCATCCAGAAAGGCCAAACAAATATGGAAAGTATTGGTGTTGGTGCTTCTGGTCATTGGAGGTGGAGGTGCTTGATCTACTTGCAGCCAAGGAGATCGCTGTTCGCGCGTGGGATGAGTCTCTTAATACCCAGCCAGAGAATCTTATTTGGAATGTTATGGGCATGATGAACAACTGCTGGTTCAAGGTGAAAACCAACGTGTGCAAGCCTCACAAGGGCGAAATCGGCCTTGTCTTCGAACACCCAACACAACCGGGGAACCAACCGGGCGGTTGGATGGCAAAGGAAAGGCACCTAGAGAAGTCAACAGAGTCAACACAAACACTCAAGAAGAGTGTCTCCTCACCCTTCATGAATACAGCTTCAAAGATGTTTTCCATGTCCGAAGTGAAAAAGCACAACACACCAGATTCGACATGGATCATTGTCCACGGCCATGTCTATGACTGCACCAGGTTCCTCAAGGAACACCCTGGAGGCTCTGACAGCATCCTCATCAATGCCGGCTCCGATTGCACGGAGGAGTTTGATGCCATTCATTCCGATAAGGCTAAGAAGTTGCTTGAAGATTTCCGAATTGGCGAGCTCATTACCACAGGATACACCTCCGATTCATCATCACCCAACAACTCCGTGCATGGAAACTCCGAACTCATCCACCTCGCTCCCATAAAAGAGACCACCATACCACCACTACCACCACCACCAATTACGCCACAACCACCGGCGCAAAGCGTAGCCCTCAACCCACGGGAAAAAATTCCATGTAAGCTTGTATCCAAAACTTCCATCTCTCACGACGTGAGGCTCTTCCGTTTCGCTCTCCCCAAGGAAGACCAGAAACTAGGCCTCCCAGTGGGGAAGCACATTTTCGTCTGCGCTGCCATCGACGGTAAACTCTGCATGAGAGCCTATACGCCAACGAGCAGTGCAGATGAAGTGGGCCACTTCGATCTTCTCATCAAGGTTTACTTCAAAGATGTGCATCCAAAGTTCCCCAACGGAGGATTAATGTCGCAGCACCTGGACTCGCTTCCTATCGGCTCGTCCATTGACGTTAAGGGCCCATTGGGCCACATAGAGTACACAGGAAGAGGTAATTTCTTGATCCATGGGAAACAAAGGTTTGCAACTAATCTTACCATGGTGGCCGGTGGAACTGGGATCACACCAATTTACCAGGTGGCTCAGGCGATTCTCAAGGACCCTGAGGACCGCACCAAGATGTACGTGGTGTATGCGAACCGAACGGAGGATGATATATTGCTGAGGGAAAAGCTTGATGCGTGGGCTAAGGAGTACGGTGATAGGTTGAAGGTTTGGTATGTGGTGGAGAAAGCAAGGGAAGAGTGGGAGTACAGTGTGGGGTACATAACAGAGAGCGTGCTAAGGGAGCATGTTCCAGAAGGCTCTCAAGGTACTTTGGCTTTGGCTTGTGGTCCACCACCTATGATTCAGTTTGCGGTGCAACCTAATTTGGAGAAGATGGGATATGACATCAAGAATGATTTGCTCATGTTTTGA 2697 0.5069 MAASVESRQFTAVNGVVRTPPMIKPPLPSPNLDDSDSSSSDDEENDYVSTLRALIHKSNAELEPSILDARDDGTSDSWVYRNASMVRLTGKHPFNAEAPLPRLMHHGFITPVPLHYVRNHGPVPKTRWEDWTIEISGLVNKPVQLIMDRLVREFPNREFPVTLVCAGNRRREQNMVRQSIGFNWGSAGVSTSVWRGVPLRHVLRRCGIMSRGKGALHVWFEGEEDLPGGGGSKYGTSIKREVAMDPSRDIILAYMQNGEVLKPDHGYPLRVIIPGFIGGRMVKWLRKIVVSSKECDSHYHFKDNRVLPSHVDAELANEEGWWYKPEYIINELNINSVITTPCHEEILPINSWTTQRPYTLRGYAYSGGGRKVTRVEITLDGGETWQVCELNHPERPNKYGKYWCWCFWSLEVEVLDLLAAKEIAVRAWDESLNTQPENLIWNVMGMMNNCWFKVKTNVCKPHKGEIGLVFEHPTQPGNQPGGWMAKERHLEKSTESTQTLKKSVSSPFMNTASKMFSMSEVKKHNTPDSTWIIVHGHVYDCTRFLKEHPGGSDSILINAGSDCTEEFDAIHSDKAKKLLEDFRIGELITTGYTSDSSSPNNSVHGNSELIHLAPIKETTIPPLPPPPITPQPPAQSVALNPREKIPCKLVSKTSISHDVRLFRFALPKEDQKLGLPVGKHIFVCAAIDGKLCMRAYTPTSSADEVGHFDLLIKVYFKDVHPKFPNGGLMSQHLDSLPIGSSIDVKGPLGHIEYTGRGNFLIHGKQRFATNLTMVAGGTGITPIYQVAQAILKDPEDRTKMYVVYANRTEDDILLREKLDAWAKEYGDRLKVWYVVEKAREEWEYSVGYITESVLREHVPEGSQGTLALACGPPPMIQFAVQPNLEKMGYDIKNDLLMF 898
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc181396g00006 898 PRINTS Cytochrome B5 signature 538 548 IPR001199 -
Stsc181396g00006 898 PRINTS Cytochrome B5 signature 575 587 IPR001199 -
Stsc181396g00006 898 PRINTS Cytochrome B5 signature 548 562 IPR001199 -
Stsc181396g00006 898 PRINTS Cytochrome B5 signature 563 570 IPR001199 -
Stsc181396g00006 898 CDD cyt_b5_reduct_like 647 893 - -
Stsc181396g00006 898 PRINTS Eukaryotic molybdopterin domain signature 329 341 IPR008335 GO:0016491
Stsc181396g00006 898 PRINTS Eukaryotic molybdopterin domain signature 439 452 IPR008335 GO:0016491
Stsc181396g00006 898 PRINTS Eukaryotic molybdopterin domain signature 161 172 IPR008335 GO:0016491
Stsc181396g00006 898 PRINTS Eukaryotic molybdopterin domain signature 401 411 IPR008335 GO:0016491
Stsc181396g00006 898 PRINTS Eukaryotic molybdopterin domain signature 278 291 IPR008335 GO:0016491
Stsc181396g00006 898 PRINTS Eukaryotic molybdopterin domain signature 245 261 IPR008335 GO:0016491
Stsc181396g00006 898 PRINTS Eukaryotic molybdopterin domain signature 262 275 IPR008335 GO:0016491
Stsc181396g00006 898 PRINTS Eukaryotic molybdopterin domain signature 187 202 IPR008335 GO:0016491
Stsc181396g00006 898 PRINTS Eukaryotic molybdopterin domain signature 360 374 IPR008335 GO:0016491
Stsc181396g00006 898 PRINTS Eukaryotic molybdopterin domain signature 426 438 IPR008335 GO:0016491
Stsc181396g00006 898 PRINTS Eukaryotic molybdopterin domain signature 86 100 IPR008335 GO:0016491
Stsc181396g00006 898 PRINTS Eukaryotic molybdopterin domain signature 108 124 IPR008335 GO:0016491
Stsc181396g00006 898 PRINTS Eukaryotic molybdopterin domain signature 374 386 IPR008335 GO:0016491
Stsc181396g00006 898 PRINTS Eukaryotic molybdopterin domain signature 172 184 IPR008335 GO:0016491
Stsc181396g00006 898 SUPERFAMILY Cytochrome b5-like heme/steroid binding domain 512 591 IPR036400 -
Stsc181396g00006 898 FunFam Nitrate reductase 331 507 - -
Stsc181396g00006 898 PRINTS Flavoprotein pyridine nucleotide cytochrome reductase signature 866 874 IPR001709 GO:0016491
Stsc181396g00006 898 PRINTS Flavoprotein pyridine nucleotide cytochrome reductase signature 810 821 IPR001709 GO:0016491
Stsc181396g00006 898 PRINTS Flavoprotein pyridine nucleotide cytochrome reductase signature 842 858 IPR001709 GO:0016491
Stsc181396g00006 898 PRINTS Flavoprotein pyridine nucleotide cytochrome reductase signature 547 557 IPR001709 GO:0016491
Stsc181396g00006 898 PRINTS Flavoprotein pyridine nucleotide cytochrome reductase signature 694 701 IPR001709 GO:0016491
Stsc181396g00006 898 PRINTS Flavoprotein pyridine nucleotide cytochrome reductase signature 772 791 IPR001709 GO:0016491
Stsc181396g00006 898 PRINTS Flavoprotein pyridine nucleotide cytochrome reductase signature 798 807 IPR001709 GO:0016491
Stsc181396g00006 898 PRINTS Cytochrome B5 reductase signature 673 684 - -
Stsc181396g00006 898 PRINTS Cytochrome B5 reductase signature 694 701 - -
Stsc181396g00006 898 PRINTS Cytochrome B5 reductase signature 772 791 - -
Stsc181396g00006 898 PRINTS Cytochrome B5 reductase signature 810 821 - -
Stsc181396g00006 898 PRINTS Cytochrome B5 reductase signature 739 753 - -
Stsc181396g00006 898 PRINTS Cytochrome B5 reductase signature 866 874 - -
Stsc181396g00006 898 FunFam Nitrate reductase 509 590 - -
Stsc181396g00006 898 ProSiteProfiles Ferredoxin reductase-type FAD binding domain profile. 642 754 IPR017927 GO:0016491
Stsc181396g00006 898 Pfam Oxidoreductase FAD-binding domain 647 753 IPR008333 -
Stsc181396g00006 898 PIRSF Nitr_rd_NADH 4 897 IPR012137 GO:0006809|GO:0042128|GO:0050464
Stsc181396g00006 898 FunFam Nitrate reductase [NADH] 749 898 - -
Stsc181396g00006 898 Pfam Cytochrome b5-like Heme/Steroid binding domain 518 587 IPR001199 -
Stsc181396g00006 898 SUPERFAMILY Oxidoreductase molybdopterin-binding domain 69 329 IPR036374 -
Stsc181396g00006 898 Gene3D - 90 330 IPR036374 -
Stsc181396g00006 898 ProSitePatterns Eukaryotic molybdopterin oxidoreductases signature. 137 172 IPR022407 GO:0043546
Stsc181396g00006 898 ProSitePatterns Cytochrome b5 family, heme-binding domain signature. 544 551 IPR018506 GO:0020037
Stsc181396g00006 898 Gene3D - 749 898 IPR039261 -
Stsc181396g00006 898 MobiDBLite consensus disorder prediction 1 47 - -
Stsc181396g00006 898 Gene3D Translation factors 634 748 - -
Stsc181396g00006 898 Pfam Mo-co oxidoreductase dimerisation domain 327 458 IPR005066 GO:0016491|GO:0030151
Stsc181396g00006 898 SUPERFAMILY Ferredoxin reductase-like, C-terminal NADP-linked domain 742 892 IPR039261 -
Stsc181396g00006 898 ProSiteProfiles Cytochrome b5 family, heme-binding domain profile. 513 588 IPR001199 -
Stsc181396g00006 898 PANTHER SULFITE REDUCTASE 63 461 - -
Stsc181396g00006 898 Pfam Oxidoreductase molybdopterin binding domain 120 299 IPR000572 -
Stsc181396g00006 898 FunFam Nitrate reductase 72 321 - -
Stsc181396g00006 898 SUPERFAMILY E set domains 331 458 IPR014756 -
Stsc181396g00006 898 CDD eukary_NR_Moco 71 456 - -
Stsc181396g00006 898 SMART Cyt_b5_2 516 588 IPR001199 -
Stsc181396g00006 898 Gene3D - 331 507 - -
Stsc181396g00006 898 SUPERFAMILY Riboflavin synthase domain-like 637 754 IPR017938 -
Stsc181396g00006 898 FunFam NADH-cytochrome b5 reductase 633 748 - -
Stsc181396g00006 898 Gene3D - 508 590 IPR036400 -
Stsc181396g00006 898 Pfam Oxidoreductase NAD-binding domain 773 880 IPR001433 GO:0016491
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc181396g00006 Stsc-Chr181396 27046 34010 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc181396g00006 635 889 NADPH P450 reductases AT5G17770 39.300 8.67e-52 181
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc181396g00006 K10534 - gmx:100813471 1515.75