Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc181395g00011 ATGGCAGATACTGTGATTTCCTTTGTGCAAGATAACTTGTCCCAATTGCTAGCACGCGAAGCCAAGCTACTATTTGGAGTGGAAGACAGAGTTAGATCCCTTCAAAGCGAGCTCAGCATGATAAACGTGCTTCTCAAAACCTTTCAAGGGAAAATCAAGAAAGAAATCGAGAAAGAAGTTCTTCGTCAGATCAGCGATGTCGCCCACGAAGCTGAGGATGCCATCGACACGTTTGTTGTCAACGTGGCTATGTACAAGTGTAGAACCAAGCTGGGGAGGATGCTCCACGGTTTTGAACATGCAAAGTTGCTCCATGATGTGGCTGAGAAAATAGACTCCATCAAAGCCACTATCAATGAAACAATAGACAACAAGATCAAGTTCACGGATGTCTTCCAACAAGAAACTGAATCATCTTCAGCAAGAGAGGACGAGGAGAGAGTGCTGTTGCTGCACAAGAGAAGAAGAAATGTGGAAGAACATGATGTAGTTGGTTTTGTTCGTGAATCCAAGCAAGTCATTCAGCTTCTTAAGGAAGAGAGTTCCGAAAGCAATGTCGTCTCCATCATCGGTATGGGTGGCTTGGGCAAAACCACCCTTGCTCGAAAGGTCTACAATAGCGATGAGGTGAAGTCATATTTCAATTATAGTGCATGGGTTTATGTGTCAAATGAGTGCAGAGTTAAGGAGCTTTTGCTTGGCCTTATCAAGACTTTGATGCCTAACCTTGAATACGAGCATGGCAGGAAAAAGAAGGGAAAGAAACAAAAGGGAATAGAGAAATCAGGTGATATGTCTAGCTTGGGTATGGACGAACTAAAGCTCATGGTGCGTGATTTCTTAACCAGGAAAAGGTATCTGGTAGTCCTGGATGACCTCTGGAAGACTCAAGACTGGGATGAGGTACAAGATGCTTTTCCAAACGACAATAATGGTAGTAAAATACTTATTACTAGCCGTTTGAGAGAAGTGGCATCACATACGAGTCAATATCCTCCTTATGACCTCCAATTTCTCAGTTATGATGAAAGCTGGGAACTCTTTTCTAGGAAAGTGTTTACAGGAGAAGAGTGTCCTTGTGATATAGAGCATCTTGGAAAACAAATGGTGAAAAGTTGTGGGGGTTTGCCACTCTCCATTGTTGTTTTGGCTGGGTTGCTGGCAAACAAGGAGAAATCACACAGGGAATGGTCCAGAGTTGTGGGACATGTGAACTGGTATCTTACTCGAGACGAGACCCAAGTGAAGGACATTGTACTCAAACTCAGCTACGACAACTTGCCTTCAACACTAAAGCCCTGCTTTCTTTATTTCGGGATCTATCCTGAAGATTCTGAGATACTTGTAAAGTCATTGATGCAAAAATGGGTTGCTGAGGGATTTATTCAACAAAGGGGGACCAGAAATGCAGAGGATGTTGCTGAAGATTATTTGTATGAGCTCATTGATCGTAGCTTGATTCAAGCATCGCGAATGAACCTTAATGGAGATGTGAAGGCATGTCGCATCCATGATCTTCTTCGAGATCTTTGCATATCTGAGGCCAAGGAGTACAAGCTTTTTGAAGTATGCACAGATAGTAACATTTTGGAGAGATCAAAACCTCGCAGGCTTTCTATCCAATGCGGCATGCATCGCTACGTTTCTTCAAACGGCAATGACCATTCATGTGTCCGCTCTTTGTTTTGCCTTGACCCAACAAGGTATGATTTTACCCCCAGTGAGATGAAATGGATTTTTAAAATGTTCAAATTGGTTCGGGTATTAGATTTTGGGGAAAACTGTTGCAGCAAAATCCCTTCCAACTTGGGCTTATTTATCCATTTAAGTGGAGTATGGAACCTGAAACAACTTAGGCATTTGAATACTAATGGAATCATCACACTACATGGCCACCATTGTTCAAAAGTAGATGATCAAGTTATGTGGAATCTTCAAACAATCTATTACATTACATTCAATAGACTAATTGCACACATGTTAGATAAAGGAAGCTTTCCCAGCCTACGAAAGTTGGGTTTGCACATCTCTTGGGTCCAAAAAGATAATGTGCATGAGTTGTTGTCAACCCTACAACGATTAACTCATCTGAACAACTTACAACTCTCCTTTGAATGGAAGAATCAAAGGCGCTCATCTCCCTTAAACTACAAGCACATGGAATGGCACATTGGGGTCAAACCAATTCAAGTGTTACAGAGCCTGCAGCACTTGTCAAATCTGACCACATTAAAAGTTTATGGAGCTTTGGACCTTGCAACGTGTGATATTGCATTTCCTCCCTGCATTACAAAATTAACGTTGAAGGGAATTAGCTGCGTGAATGATGATGGAATGAATGCCATTGGTAATCTTGCTAAACTTCAACGTTTGAGATTGTATGGATCACTTACATTTCATATTCCCTTTGAGATTAATTGCACTCCTGGAAGTTTCTCACAGCTTCAGGTTTTTGAGATGCAACGTCTGAATGTTAAGAACTGGAAATTAGGCAATGGTGCAATGTCATGCCTTCAAAGACTGCTTATCAAAGACTGTAAAAGATTAGAGAATCTCCCAGATGCAGTGTGGTCTTTGAATGCCCTGAGACAAGTACAAGTTATGAGACCCTCCCAAGCATTGTCTCTTGCGCTAGCAAATTTGGAATTCAAGGATGGATGTGACCTCACAATCAATTAG 2679 0.4169 MADTVISFVQDNLSQLLAREAKLLFGVEDRVRSLQSELSMINVLLKTFQGKIKKEIEKEVLRQISDVAHEAEDAIDTFVVNVAMYKCRTKLGRMLHGFEHAKLLHDVAEKIDSIKATINETIDNKIKFTDVFQQETESSSAREDEERVLLLHKRRRNVEEHDVVGFVRESKQVIQLLKEESSESNVVSIIGMGGLGKTTLARKVYNSDEVKSYFNYSAWVYVSNECRVKELLLGLIKTLMPNLEYEHGRKKKGKKQKGIEKSGDMSSLGMDELKLMVRDFLTRKRYLVVLDDLWKTQDWDEVQDAFPNDNNGSKILITSRLREVASHTSQYPPYDLQFLSYDESWELFSRKVFTGEECPCDIEHLGKQMVKSCGGLPLSIVVLAGLLANKEKSHREWSRVVGHVNWYLTRDETQVKDIVLKLSYDNLPSTLKPCFLYFGIYPEDSEILVKSLMQKWVAEGFIQQRGTRNAEDVAEDYLYELIDRSLIQASRMNLNGDVKACRIHDLLRDLCISEAKEYKLFEVCTDSNILERSKPRRLSIQCGMHRYVSSNGNDHSCVRSLFCLDPTRYDFTPSEMKWIFKMFKLVRVLDFGENCCSKIPSNLGLFIHLSGVWNLKQLRHLNTNGIITLHGHHCSKVDDQVMWNLQTIYYITFNRLIAHMLDKGSFPSLRKLGLHISWVQKDNVHELLSTLQRLTHLNNLQLSFEWKNQRRSSPLNYKHMEWHIGVKPIQVLQSLQHLSNLTTLKVYGALDLATCDIAFPPCITKLTLKGISCVNDDGMNAIGNLAKLQRLRLYGSLTFHIPFEINCTPGSFSQLQVFEMQRLNVKNWKLGNGAMSCLQRLLIKDCKRLENLPDAVWSLNALRQVQVMRPSQALSLALANLEFKDGCDLTIN 892
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc181395g00011 892 Gene3D - 5 108 - -
Stsc181395g00011 892 PRINTS Disease resistance protein signature 833 849 - -
Stsc181395g00011 892 PRINTS Disease resistance protein signature 186 201 - -
Stsc181395g00011 892 PRINTS Disease resistance protein signature 373 387 - -
Stsc181395g00011 892 PANTHER DISEASE RESISTANCE PROTEIN RP 33 847 IPR044974 GO:0006952
Stsc181395g00011 892 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 151 438 IPR027417 -
Stsc181395g00011 892 FunFam Probable disease resistance protein At1g63360 424 513 - -
Stsc181395g00011 892 CDD RX-CC_like 2 123 IPR038005 -
Stsc181395g00011 892 Pfam NB-ARC domain 172 426 IPR002182 GO:0043531
Stsc181395g00011 892 Pfam Rx N-terminal domain 5 86 IPR041118 -
Stsc181395g00011 892 Gene3D Ribonuclease Inhibitor 567 875 IPR032675 -
Stsc181395g00011 892 FunFam Probable disease resistance protein At5g66910 338 425 - -
Stsc181395g00011 892 Gene3D - 338 423 IPR042197 -
Stsc181395g00011 892 Gene3D - 424 514 IPR036388 -
Stsc181395g00011 892 Gene3D - 144 331 IPR027417 -
Stsc181395g00011 892 SUPERFAMILY L domain-like 493 864 - -
Stsc181395g00011 892 FunFam Probable disease resistance protein At1g61300 146 332 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc181395g00011 Stsc-Chr181395 58022 60838 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc181395g00011 164 510 WRKY Transcription Factor Family AT5G45050 23.714 4.78e-07 52.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc181395g00011 - - aip:110269956 1108.59