Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc181395g00005 ATGCTTTGTTCCAGCATCTGCCACACTGATATCTCAATGATTCAAGGAAGTCCTCTATTTCAATTTTATCCTCTAGTACTTGGACATGAAGGAGTTGGGGTTGTAGAAACTGTTGGGGATGAAGTGAAGAGTGTGAAAGAAGGTGATATGGTGATTCCAACATATGTAGGAGAGTGCCAAGAATGTGAGAATTGCATTTCAGGAAAATCAAATTTGTGCTTGACATATCCAGTGATGCTGACTGGCTTGATGCCAGATAACACTTCAAGGATGTCCTGCAAAGGCCAGAGGCTATACCTCCCTTCTACTTGCGCCACGTGGTCCGAGTACACGGTTATCGATGTTAACTACCTTGTGAAGGTTGATCCAAGCATGAATCCAGCACATGCCAGCTTCATCTCATGTGGATTCTCAACTGGCTATGGAGCTGCATGGAAGGAAGCCAGAGTTGAAAAAGGATCAAGTGTTGCTGTTTTTGGTCTTGGTGCTGTTGGATTAGGGGCTATAAGTGGAGCAAAAATGTTGGGAGCAACTAAGATTATAGGCATTGACATAAATGATATGAAGAGAGAAAAAGGTGAAGCTTTTGGAATGACTCACTTTATAAATCCAAGTAATTCTGATAAATCTCCTTCAGCTTTGGTGAAGGAACTAAGTGGTGGAATGGGTGTGGATTATTCATTTGAGTGCACTGGGGTTGGCCCTTTGCTTACTGAATCATTAGAAGCTACAAAAGCGGGATCAGGTAAAGCAATAACACTTGGTCTAGGAAATGAAACATTTGTATCATTTGGCCTGCTTTCTATTTTTTTCGGAAGAACTTTGAAAGGAACAGTATTTGGTGGGTTAAAACCCATATCAGACCTATCCATCATAGCTGACAAATGCATTAAACAGGAATTCCCTCTTGAAAAACTGTTCACCCATGAGGTCCAATTAACAGACATAGAAGAAGCATCTGAGCTCTTGAAACAACCCAGTTGTGTGAAAGTTGTCATCAAGATATGA 1008 0.4117 MLCSSICHTDISMIQGSPLFQFYPLVLGHEGVGVVETVGDEVKSVKEGDMVIPTYVGECQECENCISGKSNLCLTYPVMLTGLMPDNTSRMSCKGQRLYLPSTCATWSEYTVIDVNYLVKVDPSMNPAHASFISCGFSTGYGAAWKEARVEKGSSVAVFGLGAVGLGAISGAKMLGATKIIGIDINDMKREKGEAFGMTHFINPSNSDKSPSALVKELSGGMGVDYSFECTGVGPLLTESLEATKAGSGKAITLGLGNETFVSFGLLSIFFGRTLKGTVFGGLKPISDLSIIADKCIKQEFPLEKLFTHEVQLTDIEEASELLKQPSCVKVVIKI 335
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc181395g00005 335 ProSitePatterns Zinc-containing alcohol dehydrogenases signature. 28 42 IPR002328 GO:0008270|GO:0016491
Stsc181395g00005 335 SUPERFAMILY GroES-like 2 150 IPR011032 -
Stsc181395g00005 335 Gene3D - 1 330 - -
Stsc181395g00005 335 PANTHER ALCOHOL DEHYDROGENASE 1 327 - -
Stsc181395g00005 335 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 126 295 IPR036291 -
Stsc181395g00005 335 FunFam S-(hydroxymethyl)glutathione dehydrogenase 140 278 - -
Stsc181395g00005 335 Pfam Zinc-binding dehydrogenase 163 282 IPR013149 -
Stsc181395g00005 335 Gene3D - 140 278 - -
Stsc181395g00005 335 Pfam Alcohol dehydrogenase GroES-like domain 3 121 IPR013154 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc181395g00005 Stsc-Chr181395 26832 28841 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc181395g00005 1 325 Monolignol Biosynthesis Gene Families AT2G21730 25.228 1.00e-13 69.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc181395g00005 K00121 - gmx:100798341 497.278