Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc181392g00005 ATGGTGAAGGAGACATTGCACCTTGCAACTGCACCTTCCACGGTTGTGTGTCGAGAAGAGGAGCAGGATATGATTTTGGGGTTCTGCAAGTCCTGCATTGAGCACGAGAAGGCTGGGAGNNNNNNNNNNTTGCCCCGGAACTGGGAAATCGTTGTCTATGGAGAAAGTGAAAGAGTCTTTACTCAACTGGGCAAAAGAGGTTTCTCACTGCCAGATGTTTTATCAGTAAATTGTACATCCCTTGCCAATACATCTGATATTTTCACCAAGATACTTGGTTTAAGCCAATCACCGGGAAAAAGGGTTTCGGCAACACCCTTGCAACAACTTCAGAACATGTATTCACAGAAATCTTCTACCAGGAATATGACGTTGATAGTTGCTGATGAATTAGATTACCTAATAACCAGAGACAGGGCTGTGCTCCATGACCTTTTCATGCTTACCACCTTTCCATTTGCCAGATGTATATTAATAGGGGTAGCAAATGCTATTGACCTAGCTGATCGTTTTCTTCCAAGGCTTACATCCCTGAATTGCAAGCCTACTGTTGTGACTTTTCGTGCCTACTCTAAAGATCAGATCCTTAGGATTCTTGAAGAAAGGCTAACTGAACTTCCTTACACTGTCTTTCAACGCCAAGCACTGGAACTATGTGCTAGGAAAGTTGCTGCAGCTTCTGGAGATATGCGGAAAGCTCTTTGTATATGCAGGAGTGCAATAGAGATGCTAGAAGCAGAAATTAGAGAATCTGTGTGCAATTTGAATACTCCATTGGAAGAGAAATCATCTTCTGAACAAAATATGGCTACAGCTTCTGATCCTATGAAGAAGCAAGAATTTGACATTGTAAGGATTGACCATATGGCTCGTGCTTTGTCAAAGACATATAGATCACCAGTGGTGGATACTATACAGTCTCTGCCACATCATCAACAGATTATTCTCTGCTCATCCATGAAACATTTCCGTGGAGCCAAGAAAGATACAATCCTTGGAGAGTTATATAAATCATACTCTGAGTTATGCAAATTGACACTTATTCCCCCAGCAGGAATATTGGAATTCTCAAACATGTGCAGAGTGCTTAATGATCAGGGGCTCATTAAACTAGGACCGTCGCGAGAGGATAAATTGAAAAGGGTAACTCCAAAAGTTGATGAGGCTGATATTACTTTTGCATTGCAGGGAATCAGGTTTTTTAGAAATTGTCTTCAATGA 1221 0.412 MVKETLHLATAPSTVVCREEEQDMILGFCKSCIEHEKAGXXXXLPRNWEIVVYGESERVFTQLGKRGFSLPDVLSVNCTSLANTSDIFTKILGLSQSPGKRVSATPLQQLQNMYSQKSSTRNMTLIVADELDYLITRDRAVLHDLFMLTTFPFARCILIGVANAIDLADRFLPRLTSLNCKPTVVTFRAYSKDQILRILEERLTELPYTVFQRQALELCARKVAAASGDMRKALCICRSAIEMLEAEIRESVCNLNTPLEEKSSSEQNMATASDPMKKQEFDIVRIDHMARALSKTYRSPVVDTIQSLPHHQQIILCSSMKHFRGAKKDTILGELYKSYSELCKLTLIPPAGILEFSNMCRVLNDQGLIKLGPSREDKLKRVTPKVDEADITFALQGIRFFRNCLQ 406
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc181392g00005 406 PANTHER CELL DIVISION CONTROL PROTEIN 6-RELATED 2 404 - -
Stsc181392g00005 406 SUPERFAMILY "Winged helix" DNA-binding domain 301 404 IPR036390 -
Stsc181392g00005 406 FunFam Cell division control protein 179 305 - -
Stsc181392g00005 406 Gene3D - 57 185 IPR027417 -
Stsc181392g00005 406 Pfam CDC6, C terminal winged helix domain 316 394 IPR015163 -
Stsc181392g00005 406 SMART Cdc6_C_2 316 395 IPR015163 -
Stsc181392g00005 406 Pfam AAA domain 71 150 IPR003593 GO:0016887
Stsc181392g00005 406 Pfam AAA lid domain 212 246 IPR041083 -
Stsc181392g00005 406 PIRSF Cdc6 1 40 IPR016314 GO:0006270|GO:0051301
Stsc181392g00005 406 PIRSF Cdc6 55 406 IPR016314 GO:0006270|GO:0051301
Stsc181392g00005 406 Gene3D - 186 277 - -
Stsc181392g00005 406 FunFam Cell division control protein 308 398 - -
Stsc181392g00005 406 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 71 252 IPR027417 -
Stsc181392g00005 406 Gene3D - 301 391 IPR036388 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc181392g00005 Stsc-Chr181392 15943 20691 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc181392g00005 2 405 Core DNA Replication Machinery Family AT2G29680 59.124 5.68e-165 471
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc181392g00005 K02213 - gmx:100787371 623.624