Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc181391g00004 ATGGGTTGGCTTAGCAAATTTTTTAAAGGCTCCGACCAAAAGATTTCGGAAGGTCATTACCATTCATATTATAACGGGGATGCGGATTCTTACTTGCCGTCGACCTCTGGTGTGACAAACGATGTTTGGCCCGATAATGACAACGAAGATATTGATCGTGCCATTGCATTATCTCTGGCAGAGCAAAATCATAAAGGACACCATGTAAATGACTACAGATCACAATTAGAAGAAGATGAACAACTTGCTAGAGCCATAGAAGAAAGCCTAAATCTAGAGTCTCCTCCCAAATATGGAAATGAAAACATGTATCAACCCCATCCGGCTGTTCCAATTCCAGTACCAGTGTATTTCCCAATGGGATCAAGTTTTCTGTATAATAGGATTTGTGCTGGTTGCCATGCCGAGATTGGTTATGGACGATACCTAAATTGCTTGAATGCCTTCTGGCATCCCGAATGCTTCCGCTGCCATGCTTGCAACCTACCGATCTCTGATTATGAGTTCTCTACGTCGGGAAATTACCCTTACCATAAATCATGCTATAAGGAAAGCTACCATCCAAAATGTGATGTCTGCAAGCACTTCATTCCAACAAACCCTGCTGGTCTTATTGAATATAGGGCACATCCATTCTGGGTACAGAAATATTGCCCTTCACATGAACACGATAACACTCCGAGATGTTGCAGCTGTGAGCGAATGGAGCCACGGGAGACTGGATATATCGGTCTTAATGATGGCCGGAAGCTTTGCTTAGAGTGCTTAGACTCTGCTATCATGGATACAAGCGAATGCCAACCCCTGTATACCGATATACAAAGATTCTACGAAAGCTTGAACATGAAACTGGAGCAGCAAATTCCACTGCTCTTGGTTGAAAGACAAGCCCTGAATGAAGCAAGAGAGGGGGAGAAGCATGGCCACTATCACATGCCGGAGACTAGAGGACTATGCCTTTCAGAAGAGCAGACTATCAGCACCGTCTCGAGACGACCGAGACTTGGGGCAGGAAACAGAGCAATAGACATGAGAACACAATCATACAAATTGACGAGACGATGCGATGTGACAGCAATTCTCATTTTATTCGGACTTCCAAGATTGCTTACTGGCTCGATCCTAGCTCACGAAATGATGCATGCATGGCTGCGGCTTAAAGGCTACCGAACCCTAAGTCAAGACGTCGAAGAAGGTATATGTCAGGTTATGGCGTACATGTGGTTGCAATCTGAGCTCGCTTCTGCGTCATCCTCATCCTCATCTTCGACATTTAGAAAAGCGAAACGACCCCCTTTTGAGATGAAGCTCGGCGAGTTCTTCAAGCACCAAATTGAATCCGACATATCACCGGTTTACGGAGATGGGTTTAGGGCAGGTCAACAAGCAGTGCAGAAGTATGGTCTTCAGAAGACCCTAAACCATATATGGATGACTGGTACTTTCCCATTTTGA 1455 0.4488 MGWLSKFFKGSDQKISEGHYHSYYNGDADSYLPSTSGVTNDVWPDNDNEDIDRAIALSLAEQNHKGHHVNDYRSQLEEDEQLARAIEESLNLESPPKYGNENMYQPHPAVPIPVPVYFPMGSSFLYNRICAGCHAEIGYGRYLNCLNAFWHPECFRCHACNLPISDYEFSTSGNYPYHKSCYKESYHPKCDVCKHFIPTNPAGLIEYRAHPFWVQKYCPSHEHDNTPRCCSCERMEPRETGYIGLNDGRKLCLECLDSAIMDTSECQPLYTDIQRFYESLNMKLEQQIPLLLVERQALNEAREGEKHGHYHMPETRGLCLSEEQTISTVSRRPRLGAGNRAIDMRTQSYKLTRRCDVTAILILFGLPRLLTGSILAHEMMHAWLRLKGYRTLSQDVEEGICQVMAYMWLQSELASASSSSSSSTFRKAKRPPFEMKLGEFFKHQIESDISPVYGDGFRAGQQAVQKYGLQKTLNHIWMTGTFPF 484
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc181391g00004 484 Coils Coil 69 89 - -
Stsc181391g00004 484 CDD LIM 157 232 - -
Stsc181391g00004 484 Pfam LIM domain 130 184 IPR001781 -
Stsc181391g00004 484 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 127 155 - -
Stsc181391g00004 484 CDD LIM_DA1 130 182 - -
Stsc181391g00004 484 ProSiteProfiles Ubiquitin-interacting motif (UIM) domain profile. 77 96 IPR003903 -
Stsc181391g00004 484 Pfam Ubiquitin interaction motif 47 62 IPR003903 -
Stsc181391g00004 484 Pfam Ubiquitin interaction motif 77 90 IPR003903 -
Stsc181391g00004 484 Gene3D Cysteine Rich Protein 123 187 - -
Stsc181391g00004 484 ProSiteProfiles Ubiquitin-interacting motif (UIM) domain profile. 46 65 IPR003903 -
Stsc181391g00004 484 SMART lim_4 129 181 IPR001781 -
Stsc181391g00004 484 ProSiteProfiles LIM domain profile. 128 188 IPR001781 -
Stsc181391g00004 484 SMART uim 77 96 IPR003903 -
Stsc181391g00004 484 SMART uim 46 65 IPR003903 -
Stsc181391g00004 484 ProSitePatterns LIM zinc-binding domain signature. 130 164 IPR001781 -
Stsc181391g00004 484 PANTHER PROTEIN DA1-RELATED 2 3 483 IPR045218 -
Stsc181391g00004 484 Pfam Protein DA1 280 478 IPR022087 -
Stsc181391g00004 484 FunFam Protein DA1-related 1 125 183 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc181391g00004 Stsc-Chr181391 36489 40195 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Stsc181391g00004 DA1-like 3.9e-96 CL0126
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc181391g00004 - - qsa:O6P43_016130 797.349