Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc181391g00001 ATGGCATTCTTGATCTTCAAATCCCAACCTCCTTACAACACCATCACCACAATCTCCAACCTCACTTCTTCAAACCCAATAGACCTTGCAAGAATCAATGATGTCACTAACTTGAACACAATGTTCCAAATTGGTAAAGAGGTTATTGTCCCTTTGAAGTGTTCTTGTTCTTCTTCAACAAACAAAACCAAGTATTACTACTACCAATCCAAAACCAAACATGTTCTTGGTGAATTCTTGTTGCCAGAGACAACATATTTCAATGTTGCAAATCAAACTTTCCAAGGCTTAACCACTTGTGATTCCCTGAAGAGGTTCAATCCTTATCCGCAGCTCGATTTGCGTGCCGGCTTGGAGTTGGATGTTCCATTGAGGTGTGCTTGTCCAACATGGAATCAAGCAAGAAATGGAATCAAGTATTTGATGACTTATTCAGTGAATTGGGGTGACACCATTTCTACCATTGCTGCAAGATTCAACGCAACAATACAGAATCTTCTTGAAGCCAATGGTATTTCGATGGAAACTACAATTTTTCCATTCACAACTCTTCTGATTCCTTTGCCAAGTGAACCATTGAGTTCATCAACAATCATAGTTGGCAACGTTCCACCATATGGTTCTACTTCACCACATGCCGAATCCGTTTCCAAAGAGACTACTAATATAGTTCTTGCTACTATATTTTCCATCTTGATTCTGTGCATCATGTTATGTCTAGTGTTTTCTATGAAAAAGATATCAAAAAGATTCATCAAGGAAGGTAAAAACTGTAAGAGAAATCGCGCCGTTTCGGAAGATATCCGGGTCGAGATAGCAAGCATTGATGAGACTCACTCCAAATTGTATAAGTTCAAGGAAATCAAGGATGCTACTGAGAATTTCAGTTCAAGGAACATAATCAAAGGCTCTGTATTTCGCGGCGAATTCGGTAAGAAAAGGGAGAGTTTTGCTGTCAAAAGAAGAACAACTAAAGGGCATGCTTCAAAGGAAATCAATTTACTCAGAAGAATCAACCATTTCAACTTGATCAAGCTTCAAGGGTATTGTGAAAATCAAGGTTTGTTCTATCTTGTGTTTGAATTCATGGAAAATGGATCATTAAGAGAATGGCTTAGCAGTGAAGAAAACTCATCATTTCTGCATCAAAGTTGGTCAAAGAGGATTCAAATTGCTTTGGATATTGCAAATGGACTTCAATATCTTCACAACTTCACAGATCCTTGTTATGTTCACAATGGTATTAACAGTGGAAACATTCTTCTGAACAAAGATCTCAGGGCAAAGATAACAAATTTTTCTCTTGCAGAAGAATTATCAGAAACTTGTCACACTTCAGATGATGTTTATGGCTTTGGAGTGGTGCTTTTGGAATTGATTACTGGCAAAGATTGTGCTACACTAGATGGTTTAAGAGAAGGAGTAATGATAATGGTTTCTAGGATTATGATGAACAATCTCATTGGTAAGGAGCATGAAGAAGAAAAAGAAGAAGAAAAGTTGAGTTTGTTGTTTGATCCTAGGCTCATTGGGAACTTTGAGAAAGAAAGTGCTTTGATGATGGTTAAGCTAAGTTTAGATTGCTTGAATCAAGAAGCAGTAAGTAGACCAAACATGTCAGAGGAAAAAGCAGAATATTCGATGGAAGAACACGGATTCCATTTGAACAACCTGTGCCGTTATAAAAGATTCCCAAGGGAGCTGAAAAATAATCGCCAGAAGGCTGAAACCACTAATAATTTGGTTGGATCCAACTATCCAAGGGAGCTCATCAAATAA 1779 0.3772 MAFLIFKSQPPYNTITTISNLTSSNPIDLARINDVTNLNTMFQIGKEVIVPLKCSCSSSTNKTKYYYYQSKTKHVLGEFLLPETTYFNVANQTFQGLTTCDSLKRFNPYPQLDLRAGLELDVPLRCACPTWNQARNGIKYLMTYSVNWGDTISTIAARFNATIQNLLEANGISMETTIFPFTTLLIPLPSEPLSSSTIIVGNVPPYGSTSPHAESVSKETTNIVLATIFSILILCIMLCLVFSMKKISKRFIKEGKNCKRNRAVSEDIRVEIASIDETHSKLYKFKEIKDATENFSSRNIIKGSVFRGEFGKKRESFAVKRRTTKGHASKEINLLRRINHFNLIKLQGYCENQGLFYLVFEFMENGSLREWLSSEENSSFLHQSWSKRIQIALDIANGLQYLHNFTDPCYVHNGINSGNILLNKDLRAKITNFSLAEELSETCHTSDDVYGFGVVLLELITGKDCATLDGLREGVMIMVSRIMMNNLIGKEHEEEKEEEKLSLLFDPRLIGNFEKESALMMVKLSLDCLNQEAVSRPNMSEEKAEYSMEEHGFHLNNLCRYKRFPRELKNNRQKAETTNNLVGSNYPRELIK 592
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc181391g00001 592 ProSiteProfiles LysM domain profile. 142 186 IPR018392 -
Stsc181391g00001 592 SMART LysM_2 143 187 IPR018392 -
Stsc181391g00001 592 Gene3D LysM domain 141 198 IPR036779 -
Stsc181391g00001 592 CDD LysM 143 186 IPR018392 -
Stsc181391g00001 592 SUPERFAMILY LysM domain 142 188 IPR036779 -
Stsc181391g00001 592 PANTHER LYSM-DOMAIN RECEPTOR-LIKE KINASE-RELATED 2 541 - -
Stsc181391g00001 592 Gene3D Phosphorylase Kinase; domain 1 266 362 - -
Stsc181391g00001 592 Pfam LysM domain 144 187 IPR018392 -
Stsc181391g00001 592 MobiDBLite consensus disorder prediction 571 592 - -
Stsc181391g00001 592 Gene3D Transferase(Phosphotransferase) domain 1 363 443 - -
Stsc181391g00001 592 Gene3D Transferase(Phosphotransferase) domain 1 444 554 - -
Stsc181391g00001 592 ProSiteProfiles Protein kinase domain profile. 246 554 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc181391g00001 592 SUPERFAMILY Protein kinase-like (PK-like) 285 546 IPR011009 -
Stsc181391g00001 592 Pfam Protein tyrosine and serine/threonine kinase 304 442 IPR001245 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc181391g00001 Stsc-Chr181391 9788 14246 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc181391g00001 2 541 Receptor kinase-like Gene Family AT2G23770 34.021 4.02e-85 275
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LysM Stsc181391g00001 PK_Tyr_Ser-Thr 3.8e-21 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc181391g00001 - - adu:107495902 744.962