Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc181390g00014 ATGGTGCCTGATGGAGTGGCTCAAGATGTGTGGAGTAACAATCACAGTGAGAGGAATGATGGCAGAACAGAAAACCAGAGTGACACAGGGCTGCTTGCAAATTTGGCATATGGAGTAAAAGCTTCTCAGCCTAATGATTCTATTCTAAATGCCTGTGGAGGAAGCCCGGAAAATTCGTGTGGTCTAAGTGGGGAATGTGAGCAAGGAAGCAAAGGATTTGAGGCAGAGGAAGATGAATCTAGAAGTAAAAGAAGGAGGAATGAGAATCAATCCAATGAAGCAGCGGCGGCGTCGGAGGAAGCATTAACCGAGCCTCGCATTGTGCTGCAGAGTTCTACAGATTCTGAGATAATTGGAGATGGCTTCCGCTGGAGGAAGTATGGGCAGAAGGTGGTGAAGGGCAATCCATATCCCAGAAGTTATTACAGATGCACAAATGTGAAGTGCAATGTTCGGAAGCACGTGGAGAGAGCAATAGATGATCCAAGAGCATTTGTCACCACATATGAGGGAAAGCACAATCACGAGATGCCAATCAAGAACACGAACCCAAATGTCCCCTCTGAGAAAGATTCACAAGCTGACAAACCATGA 594 0.463 MVPDGVAQDVWSNNHSERNDGRTENQSDTGLLANLAYGVKASQPNDSILNACGGSPENSCGLSGECEQGSKGFEAEEDESRSKRRRNENQSNEAAAASEEALTEPRIVLQSSTDSEIIGDGFRWRKYGQKVVKGNPYPRSYYRCTNVKCNVRKHVERAIDDPRAFVTTYEGKHNHEMPIKNTNPNVPSEKDSQADKP 197
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc181390g00014 197 Coils Coil 73 93 - -
Stsc181390g00014 197 Gene3D WRKY domain 103 179 IPR036576 GO:0003700|GO:0006355|GO:0043565
Stsc181390g00014 197 MobiDBLite consensus disorder prediction 1 29 - -
Stsc181390g00014 197 MobiDBLite consensus disorder prediction 170 197 - -
Stsc181390g00014 197 Pfam WRKY DNA -binding domain 120 176 IPR003657 GO:0003700|GO:0006355|GO:0043565
Stsc181390g00014 197 MobiDBLite consensus disorder prediction 46 65 - -
Stsc181390g00014 197 SUPERFAMILY WRKY DNA-binding domain 112 178 IPR036576 GO:0003700|GO:0006355|GO:0043565
Stsc181390g00014 197 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 27 186 IPR044810 GO:0003700
Stsc181390g00014 197 SMART WRKY_cls 118 177 IPR003657 GO:0003700|GO:0006355|GO:0043565
Stsc181390g00014 197 ProSiteProfiles WRKY domain profile. 113 178 IPR003657 GO:0003700|GO:0006355|GO:0043565
Stsc181390g00014 197 MobiDBLite consensus disorder prediction 46 106 - -
Stsc181390g00014 197 FunFam WRKY transcription factor 57 104 178 - -
Stsc181390g00014 197 MobiDBLite consensus disorder prediction 70 90 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc181390g00014 Stsc-Chr181390 52534 53932 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc181390g00014 120 185 WRKY Transcription Factor Family AT2G03340 54.545 1.23e-18 81.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Stsc181390g00014 WRKY 1.3e-25 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc181390g00014 - - gmx:100794069 271.552