Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc181389g00015 ATGGGTTGCTTTGGCTTCTGCAAACAAGATGATGGTTATAAACCTTCTGATAACCGATCCTTAATGCAAACAAATCCCACTGGGAATACCGGTTATAGTGCCAGACAAACTGCAGTGACCATTCCTCAGATCATAGAATTCAAACCGATTTCAGTCCCTTCCTTTTCACTAGATGAACTGAGGTCTTTGACAGATAATTTTGGGGCAAAATACTTCATTGGTGAGGGTGCATATGGGAAAGTGTATCGCGCCACATTGAAAGACGGCCGTGATGTTGTAGTTAAGAAGTTAGATTCCAGCAGGCAACCAGAACAAGAATTTCTTGCACAGGTCTCAATCGTATCGAGGTTAAAGCATGAAAATGTTGTTGAACTTGTCAGCTATTGTGTTGATGGTCCTCTTCGCGCCCTTGCCTATGAGTATGCTCCTAAAGGATCCCTTCATGATATTCTACATGGACGCAAAGGTGTGAAGGGTGCACAGCCTGGTCCAGTTCTGTCATGGGCTCAGAGAGTCAAAATTGCTGTTGGATCAGCCAGAGGACTTGAATATCTACATGAGAAGGCAGAGATTCATATTATCCATAGATACATCAAGTCTAGCAACATAATGCTTTTTGATGATGATGTTGCCAAGATTGCTGATTTTGATTTGTCAAACCAAAACCCGGATGCTGCGGCTCGTCTTCATTCTACCCGTGTTCTTGGAACTTTTGGTTATCATGCTCCAGAATATGCAATGACTGGACAACTTACTTCCAAGAGTGATGTGTATAGTTTCGGAGTGATATTGCTGGAGCTGTTAACTGGCCGTAAACCTGTTGATCACACGCTGCCCCGAGGGCAGCAAAGCCTTGTGACATGGGTACTGATACTTGTTTTTTTGCTGTTAAAATTTTGGTGTGTCTTATTCATTTTGTATTTTGAGTTAATTTTTGAGGTTTCAACACTGTGA 954 0.4224 MGCFGFCKQDDGYKPSDNRSLMQTNPTGNTGYSARQTAVTIPQIIEFKPISVPSFSLDELRSLTDNFGAKYFIGEGAYGKVYRATLKDGRDVVVKKLDSSRQPEQEFLAQVSIVSRLKHENVVELVSYCVDGPLRALAYEYAPKGSLHDILHGRKGVKGAQPGPVLSWAQRVKIAVGSARGLEYLHEKAEIHIIHRYIKSSNIMLFDDDVAKIADFDLSNQNPDAAARLHSTRVLGTFGYHAPEYAMTGQLTSKSDVYSFGVILLELLTGRKPVDHTLPRGQQSLVTWVLILVFLLLKFWCVLFILYFELIFEVSTL 317
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc181389g00015 317 PANTHER PTO-INTERACTING PROTEIN 1-LIKE 14 289 - -
Stsc181389g00015 317 Pfam Protein tyrosine and serine/threonine kinase 73 276 IPR001245 GO:0004672|GO:0006468
Stsc181389g00015 317 ProSiteProfiles Protein kinase domain profile. 67 317 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc181389g00015 317 Gene3D Phosphorylase Kinase; domain 1 29 141 - -
Stsc181389g00015 317 SUPERFAMILY Protein kinase-like (PK-like) 47 294 IPR011009 -
Stsc181389g00015 317 Gene3D Transferase(Phosphotransferase) domain 1 143 294 - -
Stsc181389g00015 317 ProSitePatterns Protein kinases ATP-binding region signature. 73 96 IPR017441 GO:0005524
Stsc181389g00015 317 FunFam protein STRUBBELIG-RECEPTOR FAMILY 8 142 294 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc181389g00015 Stsc-Chr181389 83174 84904 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc181389g00015 55 298 Trihelix Transcription Factor Family AT1G70460 50.204 1.52e-70 230
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIII Stsc181389g00015 PK_Tyr_Ser-Thr 1.5e-41 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc181389g00015 K13436 - gmx:547596 506.908