Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc181389g00013 ATGGGTTGCTTTGGCTTCTGCAAACAAGATGATGGTTATAAACCTTCTGATAACCGATCCTTAATGCAAACAAATCCCACTGGGAATACCGGTTATAGTGCCAGACAAACTGCAGTGACCATTCCTCAGATCATAGAATTCAAACCGATTTCAGTCCCTTCCTTTTCACTAGATGAACTGAGGTCTTTGACAGATAATTTTGGGGCAAAATACTTCATTGGTGAGGGTGCATATGGGAAAGTGTATCGCGCCACATTGAAAGACGGCCGTGATGTTGTAGTTAAGAAGTTAGATTCCAGCAGGCAACCAGAACAAGAATTTCTTGCACAGGTCTCAATCGTATCGAGGTTAAAGCATGAAAATGTTGTTGAACTTGTCAGCTATTGTGTTGATGGTCCTCTTCGCGCCCTTGCCTATGAGTATGCTCCTAAAGGATCCCTTCATGATATTCTACATGGACGCAAAGGTGTGAAGGGTGCACAGCCTGGTCCAGTTCTGTCATGGGCTCAGAGAGTCAAAATTGCTGTTGGATCAGCCAGAGGACTTGAATATCTACATGAGAAGGCAGAGATTCATATTATCCATAGATACATCAAGTCTAGCAACATAATGCTTTTTGATGATGATGTTGCCAAGATTGCTGATTTTGATTTGTCAAACCAAAACCCGGATGCTGCGGCTCGTCTTCATTCTACCCGTGTTCTTGGAACTTTTGGTTATCATGCTCCAGAATATGCAATGACTGGACAACTTACTTCCAAGAGTGATGTGTATAGTTTCGGAGTGATATTGCTGGAGCTGTTAACTGGCCGTAAACCTGTTGATCACACGCTGCCCCGAGGGCAGCAAAGCCTTGTGACATGGGCAACACCAAGGCTTAGTGAAGATAAGGTGAAGCAGTGTGTTGATGCTAGATTAAAGGGTGACTACCCTCCAAAGGCAGTTGCAAAGTTTGCTGCTGTTGCTGCTTTGTGTGTGCAATATGAAGCTGAGTTCCGGCCAAACATGAGCATTGTAGTGAAAGCTCTACAGCCACTGCTCAATACCCGTTCCGGTCAACCGAAGGAATCTTCAGCACACAAGATGTAA 1089 0.4435 MGCFGFCKQDDGYKPSDNRSLMQTNPTGNTGYSARQTAVTIPQIIEFKPISVPSFSLDELRSLTDNFGAKYFIGEGAYGKVYRATLKDGRDVVVKKLDSSRQPEQEFLAQVSIVSRLKHENVVELVSYCVDGPLRALAYEYAPKGSLHDILHGRKGVKGAQPGPVLSWAQRVKIAVGSARGLEYLHEKAEIHIIHRYIKSSNIMLFDDDVAKIADFDLSNQNPDAAARLHSTRVLGTFGYHAPEYAMTGQLTSKSDVYSFGVILLELLTGRKPVDHTLPRGQQSLVTWATPRLSEDKVKQCVDARLKGDYPPKAVAKFAAVAALCVQYEAEFRPNMSIVVKALQPLLNTRSGQPKESSAHKM 362
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc181389g00013 362 FunFam pto-interacting protein 1 143 354 - -
Stsc181389g00013 362 Pfam Protein tyrosine and serine/threonine kinase 73 343 IPR001245 GO:0004672|GO:0006468
Stsc181389g00013 362 CDD STKc_IRAK 73 346 - -
Stsc181389g00013 362 PANTHER PTO-INTERACTING PROTEIN 1-LIKE 14 351 - -
Stsc181389g00013 362 Gene3D Phosphorylase Kinase; domain 1 29 141 - -
Stsc181389g00013 362 Gene3D Transferase(Phosphotransferase) domain 1 143 361 - -
Stsc181389g00013 362 SUPERFAMILY Protein kinase-like (PK-like) 48 343 IPR011009 -
Stsc181389g00013 362 ProSitePatterns Protein kinases ATP-binding region signature. 73 96 IPR017441 GO:0005524
Stsc181389g00013 362 ProSiteProfiles Protein kinase domain profile. 67 347 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc181389g00013 Stsc-Chr181389 82700 85520 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc181389g00013 49 349 Receptor kinase-like Gene Family AT4G02010 47.302 1.60e-85 271
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIII Stsc181389g00013 PK_Tyr_Ser-Thr 5.2e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc181389g00013 K13436 - gmx:547596 613.994