Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc181389g00011 ATGGAAGCCAGATTTGGGGGGAAGAATCAGTTTTTATATGGAGGTGTGGTTCCAGAAATGAAAGGTGTTGGTAAGAGGAGTTTGGAGTGGGATTTGAATGATTGGAGATGGGATGGTGATCTCTTCACTGCTCAACAACTCAATTCGGTTCCATCAGATTGTAGGAGCCGCCAATTTTTCCCACCAAATCCTGAGATTCCTGCAAATAATAATGCTATTAATATCTCTTCTTCAATCAACCCTGTTGAAGATGGAAAGAGAGAGTTGGAGAAAAAGAGAAGAGCTGTTGTGATAGGTGAAGGTGAAGAAAGGGAGGAGCTGAATGATGAAGGAGGAGGTGGAGGTGGTGGTGGTGGTTCTCTTAATTTGAACCTTGGAGCTCAGGTTTACCCTATCATGGTGGAAGGGGATGAGAAAAGTGGGAAGAAGACAAAGGTAGTTGAGACAGCTGCTACAACTTCTAACCGTGCAGTTTGTCAGGTACAAGATTGTAGAGCTGATCTTAGTGGTGCAAAGGATTATCATCGCCGGCATAAAGTTTGTGATGTGCATTCTAAGGCTACTAAGGCCCTTGTTGGAAATGTTATGCAGCGGTTTTGTCAACAGTGTAGCAGGTTTCATGCACTTGAAGAATTTGATGAAGGGAAGCGAAGTTGTCGTAGGCGTCTGGCAGGCCATAATAGGAGGAGGAGGAAAACACATCCTGATGCAGCTGGAGTTAATGGAGGTTCTCTGAATGGTGAAAGGGGTAGTAGCTATCTGTTGATGAGTTTGTTACGGATACTGTCCAATATGCATTCAAACGGGTCAGATAATACAAGGAACCAGGATATTCTCTCTCATCTCCTGGGGAACCTGGCAAATTTGGCCGGTACACTTAATGAAAGAAGTATAGCCTCCTTGTTGGAGGGATCTCAAGGTTTGGTAAATTCTAGGGCACCTGAAGCTGCACACAATGTGCCAAATTCAAATGGTACTGAAGCCTCAATGCCTTCTGGTTCTCCCAACAAGATGGGTAATGGCTCCATCCAGCAGGATCCTCCAAGGTCTATGGTACAGTGTGAGGCAGCACCTTCAAATGCGGCCACAGAAAAATGCATGCCTTTAGGTCATGGTGGAGCAGCAAATTTGAAACCTTCAGGAATTCAGCCCTCAAATGTACTTGTATCGAGAGATAGTCAACCATCCCAAGTAATTGCAGCAGATATTAGTGTTGGAAGGGATCGCTTAAATAACATCGACCTGAATAATGTATATGATGATACACAGGATTGTGCTGAGAATCCTAAGAAGTCTTCTGTTCCTGTGGGAGAGGTTAGGTCTCTTGATCATCCTTTGTGGTTGCAATGTAACTCTCTCAAATCAAGTCCCCCACAGACAAGTATAAACTCAGATTCAACCTCCTCCCAGTCACCATCTAGTTCTAGTGGAGAAGCTCAGTCTCGCACGGATCGAATAGTTTTCAAACTCTTTGGCAAGGATCCAAGTGATTTTCCCCATGTCCTCCGATCACAGATCCTCAATTGGTTATCCCACAGTCCAACAGAGATTGAGAGCTATATAAGGCCAGGCTGTATCGTGTTGACAATATATCTCCGCCTGGATAAATCTGCATGGGAGCAGCTTTCATGTAACCTTGGATCCAGCTTGAGCAAGCTTGCTTCAAACGATTCTTTCTGGACAACAGGCTGGGTGTATACAAGGGTACAACAATCTGTAGCTTTTTTGTATAACGGCCAGGTTGTCTTAGACGTGCCCTTGCATCTTAGAAGCCCACAGAATTGTAGGATTTCATGCATTAAACCACTTGCGGTTCCCAAAAATGCAAGTGCTAAGTTTACTGTGAAAGGGTTCAACCTTTTCAGATCCAGCTCAAGGTTGCTTTGTGCTTTTGAAGGGAAGTATCTGGTACATGATAGTTCTGATGATTTGATTGATGTAGCTGATGTATCCGATGCAGCTATCCAACATCTCAGCTTCTCTTGTCAAATCCCAAATGCAATTGGCAGGGGGTTTGTTGAGGTGGTGTCATATACTCGCACTCTTATTGCGGAGAAAGAAGTTTGTACAGAGATCTGCAAGCTGGAGAATGTGATTGAGGCAGCAGATGCCACTGATGACGTATTGTTGAAGAGTAAAAAAATAGAAGAAAAGAATCGAGCGCTGGAATTCTTACAGGAAATGGGTTGGCTTCTTCATAGAAGTCGTTTGAATGTGAGGCTAGGTACCCTGGCGCCTACTCAGGATCTCTTCCATTTCAATCGGTTCGTGTGGCTTGTTGATTTCTCCATGGACCATGATTGGTGTGCTGTGGTGAAAAAACTCTTGGACATTATATTTGAGGGTGGTGTTCATGTAGGAGATCATAGCTCGATCGAGCTCGCGTTATTGGACATGGGTCTTCTACACAAAGCTGTAAAGAGAAATTCAAGGTCTATGGTGGAACTATTGTTAAAATTTGTGCCAACGAAAGGTTCGGCTGGGGCAGACAAATTCTTATTTAGACCTGATAATGTCGGGCCGGCAGGGTTGACTCCACTTCATGTTGCAGCAAGCATGAAAGGCTCGGAAAATGTCTTGGATGCATTAACCGATGATCCAGGAATGGTGGGAATCGAAGCATGGAAAAGTGCCAGGGACAATACAGGCTTGACGCCTAACGATTATGCGAGTTTCCGGGGCTATTTCTCCTACATTCAACTTGTCCAGAGGAACACCAACAAAAGGCGCGGAGGACAACATGTGCTTGATATCTCCAGCACCATTGTAGATAGTAACACAAAGCAGAAGCAACTAGATGTGAACAGGACATCTAAGATTGCAAGTTTGCACACCGAGAAAATCGAAACCACAGTGATGGCTAGTCAATGCGGGTTATGCCAGCGCAAGCTGGCTTATGGTGGCACAAGAGCGGCACTGGTTTATCGGCCGGCAATGCTCTCATTGGTGGCCATTGCAGCTGTTTGTGTATGTGTGGCATTGCTCTTCAAAAGCTCACCTAAAGTTTACTATATCTTCCAGCCTTTCAACTGGGAATCACTGGGATATGGCTATATCTAG 3060 0.4467 MEARFGGKNQFLYGGVVPEMKGVGKRSLEWDLNDWRWDGDLFTAQQLNSVPSDCRSRQFFPPNPEIPANNNAINISSSINPVEDGKRELEKKRRAVVIGEGEEREELNDEGGGGGGGGGSLNLNLGAQVYPIMVEGDEKSGKKTKVVETAATTSNRAVCQVQDCRADLSGAKDYHRRHKVCDVHSKATKALVGNVMQRFCQQCSRFHALEEFDEGKRSCRRRLAGHNRRRRKTHPDAAGVNGGSLNGERGSSYLLMSLLRILSNMHSNGSDNTRNQDILSHLLGNLANLAGTLNERSIASLLEGSQGLVNSRAPEAAHNVPNSNGTEASMPSGSPNKMGNGSIQQDPPRSMVQCEAAPSNAATEKCMPLGHGGAANLKPSGIQPSNVLVSRDSQPSQVIAADISVGRDRLNNIDLNNVYDDTQDCAENPKKSSVPVGEVRSLDHPLWLQCNSLKSSPPQTSINSDSTSSQSPSSSSGEAQSRTDRIVFKLFGKDPSDFPHVLRSQILNWLSHSPTEIESYIRPGCIVLTIYLRLDKSAWEQLSCNLGSSLSKLASNDSFWTTGWVYTRVQQSVAFLYNGQVVLDVPLHLRSPQNCRISCIKPLAVPKNASAKFTVKGFNLFRSSSRLLCAFEGKYLVHDSSDDLIDVADVSDAAIQHLSFSCQIPNAIGRGFVEVVSYTRTLIAEKEVCTEICKLENVIEAADATDDVLLKSKKIEEKNRALEFLQEMGWLLHRSRLNVRLGTLAPTQDLFHFNRFVWLVDFSMDHDWCAVVKKLLDIIFEGGVHVGDHSSIELALLDMGLLHKAVKRNSRSMVELLLKFVPTKGSAGADKFLFRPDNVGPAGLTPLHVAASMKGSENVLDALTDDPGMVGIEAWKSARDNTGLTPNDYASFRGYFSYIQLVQRNTNKRRGGQHVLDISSTIVDSNTKQKQLDVNRTSKIASLHTEKIETTVMASQCGLCQRKLAYGGTRAALVYRPAMLSLVAIAAVCVCVALLFKSSPKVYYIFQPFNWESLGYGYI 1019
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc181389g00011 1019 MobiDBLite consensus disorder prediction 223 245 - -
Stsc181389g00011 1019 FunFam Squamosa promoter-binding-like protein 14 150 220 - -
Stsc181389g00011 1019 MobiDBLite consensus disorder prediction 315 348 - -
Stsc181389g00011 1019 SUPERFAMILY SBT domain 157 237 IPR036893 GO:0003677|GO:0005634
Stsc181389g00011 1019 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 113 885 IPR044817 GO:0003677
Stsc181389g00011 1019 ProSiteProfiles Zinc finger SBP-type profile. 156 233 IPR004333 GO:0003677
Stsc181389g00011 1019 MobiDBLite consensus disorder prediction 454 481 - -
Stsc181389g00011 1019 Gene3D - 794 925 IPR036770 -
Stsc181389g00011 1019 Pfam SBP domain 159 232 IPR004333 GO:0003677
Stsc181389g00011 1019 Gene3D - 150 220 IPR036893 GO:0003677|GO:0005634
Stsc181389g00011 1019 SUPERFAMILY Ankyrin repeat 800 902 IPR036770 -
Stsc181389g00011 1019 MobiDBLite consensus disorder prediction 316 348 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc181389g00011 Stsc-Chr181389 56098 61444 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc181389g00011 1 1017 SBP-box Gene Family AT3G60030 45.629 0.0 772
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Stsc181389g00011 SBP 6.3e-29 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc181389g00011 - - gmx:100776125 1350.88