Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc181389g00007 ATGGACGAAATATCAACTGGCTTGGACAGCTCAACAACTTTTCAAATAGTTACTTGTCTCCAGCAGTTGGTGCACCTTACTGATGCAACTGCAGTGCTTTCACTCCTTCAACCAGCACCTGAAACCTTTGAATTATTTGATGATCTCATATTGATGGCAGAGGGGCAGATAGTATACCACGGCCCACGGAGTCAAGCACTCCAGTTTTTCAAGGATTGTGGTTTCTGGTGCCCAGAAAGAAAAGGTGTTGCAGATTTTCTTCAAGAGGTAATATCTAAGAAGGATCAAAGGCAATACTGGTACCGCACAGATATCCCTTACAGTTATGTATCAGTGGATGAGTTCTCTGAAGCCTTCAAAAGCAGTTACTGGGGACGGATGCTAGGTGATGAGATTGCACAACCATTTGATAACTCTCAATCCCATAAAAATTCTTTATCACATAGCATGTACTCCTTGGGCAAATGGGAAATATTTAAAGCTTGTATGAGGAGAGAGCTTCTTCTCATGCACCGGAACTCATTTATCTATGTGTTCAAAACTGCACAGCTTACAATCACAGCAATCATTACAATGACAGTGTTCTTAAGGACTCAACATGGTGTGGATGAGATAAGTGCAAACTATTTATTGGGATCATTGTACTATACACTCGTCCGCCTCATGACTAATGGAGTTGCTGAGCTGATCATGACCATTACTAGGCTTCCTGTTGTTTATAAGCAGAAGGCTTTCTATCTTTATCCGGCATGGGCTTATTGTCTTCCAGCTTCCCTTATAAAGATTCCATTTTCGTTTCTTGATGCCATTGTTTGGACATCAGTAACATACTATGTTATTGGTTACAGCCCTCAAATAACAAGGTTTCTCCGCCAGATTATTTTGCTTGTTGCTCTTCATATGTCATCAACCTCCATGTGCCGTTTCCTTGCTGGAGTTTTCAAAACAGATGTTGCAGCCACAACTGTTGGTTCCTTGGTTTTAGTACTGATGTTCTTGTTTGGAGGCTTTATTCTTCCTCGACCATCATTACCATCATGGTTGAGGTGGGCATTTTGGCTTTCTCCCATGACATATGGGGAAATAGGAATAACACAAAATGAATTTCTCGCTCCTCGCTGGCAGATCAAAGATGGAAACACCACTGTAGGAAGGAGGGTTCTAAGTGATCGTGGTTTAGACTTCGACAGCAACTTCTTTTGGATATCAATTGGAGCCTTGCTTGGTTTCGCAGTAGTTTTTGATGTTGGATTTATCTTAGCACTAACTTACTTAAAACAGCCTAAGGCATCTAGAGCCTTAGTTTCAAAAAAGAAGGTATCTCAACTAAAGGGAGAAGAAAATAGCAATAGCGTGGAGCTCAAAAATAAATCAGTTGCAGTTGATATTGGCAGCACATCAAATCAAACTCAAAGCACAGGGAAAATGGTTCTGCCCTTTCAGCCTCTGACGATAGCATTTAAGGATGTCCAGTATTTTGTTGAAACCCCACCGGAGATGAAAAAGCACGGGTCCGATGAGAAAAGACTACAATTGCTCCGTGATATCACCGGAGCCTTTAGGCCAGGAGTTCTCACTGCACTAATGGGAGTAAGTGGTGCAGGGAAGACAACTCTCATGGATGTCCTTTCTGGAAGAAAAACTGGAGGTGTCATTGAGGGAGACATAAGAATTGGAGGATACCCCAAAGTGCAGAAGACATTTGCCCGGGTTTCTGGTTATTGTGAGCAGAATGACATACATTCTCCATATATAACAGTTGAAGAATCTGTCACATACTCGGCTTGGTTGCGACTGCCAATGGAGATCGATGCAGTAACAAAAGGGAAGTTTGTAGAAGAAGTGCTTGAAACAATTGAACTTGATGACATAAAAGACTGTTTAGTTGGCATTCCTGGCCAAAGTGGCTTGTCAACTGAACAACGCAAAAGACTAACCATTGCAGTGGAGCTTGTTTCCAATCCATCAATAATCTTTATGGATGAACCAACCTCAGGCTTGGATGCCCGAGCAGCCGCAGTGGTTATGCGTGCAGTGAAGAATGTTGTTGGCACTGGAAGGACAACGGTTTGCACCATACACCAACCAAGCATTGACATATTCGAGACTTTCGACGAGTTGATTCTAATGAAAGCTGGAGGACAGATTATTTATAGCGGAATGCTGGGCCATCATTCAAATAAACTGATCGAATATTTTCAGAATATACCTGGGGTGCCGAAGATCAAAGACAACTATAATCCTGCTACTTGGATGTTAGAAGCTACCTCTGCATCTATAGAACAAGAACTCAAAATTGACTTTGCAACAGTCTACAGAGAATCACACCTTTACAGGGAAACTGTTCAAATGGTGGAAGAGTTAAGTAAACCAGTGGCAGGATCAAGCGACTTGCACTTTTCAACTCCTTTCCCACAGAATACCTTGGGGCAGTTCATGGCATGCCTATGGAAGCAACACTTGTCATATTGGAGAAGTCCTGAGTACAACTTAACACGTTTTATTTTCATGGTTGTTGCAGCAGTAATATTTGGGGCAGTATTTTGGCAGAAAGGAAAACAAATAAACAATCAGCAAGATTTGTTCAATGTATTTGGATCAATGTACATTGCTGTGGCCATTGAAATACCTTATATCTTAGTGCAAGCAATTTTATATGTGGGAATCACATATTCAATGATAGGTTTTGAGTGGTCAGTTGCAAAAGTCTTTTGGTACTTCTACACCACATTTTGTACATTTTTGTACTTTGTATATCTTGGGATGCTGATAATGTCATTGAGCACAAATCTGGATATAGCTTCTGTATTGTCAACTGCAGTCTACACCATATTCAATCTCTTCTCTGGATTCCTCATGCCAGGACCTAAAATTCCTAAATGGTGGGTTTGGTGCTACTGGATTTGCCCAACAGCATGGTCCCTGAATGGACTCCTAACATCACAATATGGGAACATGGACAAGGAGATAACCATATTTGGGAAGAAAGAACAAGTTGGTTCATTCCTAAAAGATTACTATGGCTTCAGGCATGACAGATTAAGCCTTGCAGCAGTAGTGCTCATTGCTTTCCCAATTATTTATGCCTCTCTCTTTGCCTATTGCATAGGCAAAATGAATTTTCAAAAGAGATAG 3135 0.4121 MDEISTGLDSSTTFQIVTCLQQLVHLTDATAVLSLLQPAPETFELFDDLILMAEGQIVYHGPRSQALQFFKDCGFWCPERKGVADFLQEVISKKDQRQYWYRTDIPYSYVSVDEFSEAFKSSYWGRMLGDEIAQPFDNSQSHKNSLSHSMYSLGKWEIFKACMRRELLLMHRNSFIYVFKTAQLTITAIITMTVFLRTQHGVDEISANYLLGSLYYTLVRLMTNGVAELIMTITRLPVVYKQKAFYLYPAWAYCLPASLIKIPFSFLDAIVWTSVTYYVIGYSPQITRFLRQIILLVALHMSSTSMCRFLAGVFKTDVAATTVGSLVLVLMFLFGGFILPRPSLPSWLRWAFWLSPMTYGEIGITQNEFLAPRWQIKDGNTTVGRRVLSDRGLDFDSNFFWISIGALLGFAVVFDVGFILALTYLKQPKASRALVSKKKVSQLKGEENSNSVELKNKSVAVDIGSTSNQTQSTGKMVLPFQPLTIAFKDVQYFVETPPEMKKHGSDEKRLQLLRDITGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGVIEGDIRIGGYPKVQKTFARVSGYCEQNDIHSPYITVEESVTYSAWLRLPMEIDAVTKGKFVEEVLETIELDDIKDCLVGIPGQSGLSTEQRKRLTIAVELVSNPSIIFMDEPTSGLDARAAAVVMRAVKNVVGTGRTTVCTIHQPSIDIFETFDELILMKAGGQIIYSGMLGHHSNKLIEYFQNIPGVPKIKDNYNPATWMLEATSASIEQELKIDFATVYRESHLYRETVQMVEELSKPVAGSSDLHFSTPFPQNTLGQFMACLWKQHLSYWRSPEYNLTRFIFMVVAAVIFGAVFWQKGKQINNQQDLFNVFGSMYIAVAIEIPYILVQAILYVGITYSMIGFEWSVAKVFWYFYTTFCTFLYFVYLGMLIMSLSTNLDIASVLSTAVYTIFNLFSGFLMPGPKIPKWWVWCYWICPTAWSLNGLLTSQYGNMDKEITIFGKKEQVGSFLKDYYGFRHDRLSLAAVVLIAFPIIYASLFAYCIGKMNFQKR 1044
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc181389g00007 1044 Pfam Plant PDR ABC transporter associated 377 435 IPR013581 -
Stsc181389g00007 1044 Gene3D - 1 105 IPR027417 -
Stsc181389g00007 1044 CDD ABCG_PDR_domain2 482 720 IPR034003 -
Stsc181389g00007 1044 SMART AAA_5 522 714 IPR003593 GO:0016887
Stsc181389g00007 1044 PANTHER PLEIOTROPIC DRUG RESISTANCE PROTEIN 1-LIKE ISOFORM X1 872 1044 - -
Stsc181389g00007 1044 Pfam ABC-2 type transporter 872 982 IPR013525 GO:0016020|GO:0140359
Stsc181389g00007 1044 Pfam ABC-2 type transporter 159 369 IPR013525 GO:0016020|GO:0140359
Stsc181389g00007 1044 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 485 738 IPR003439 GO:0005524
Stsc181389g00007 1044 Pfam ABC transporter 513 665 IPR003439 GO:0005524
Stsc181389g00007 1044 FunFam ABC transporter G family member 34 499 731 - -
Stsc181389g00007 1044 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 510 720 IPR027417 -
Stsc181389g00007 1044 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1 85 IPR027417 -
Stsc181389g00007 1044 Pfam ABC-2 type transporter 694 756 IPR043926 GO:0140359
Stsc181389g00007 1044 Pfam ABC-2 type transporter 37 109 IPR043926 GO:0140359
Stsc181389g00007 1044 Gene3D - 499 733 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc181389g00007 Stsc-Chr181389 35948 41564 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc181389g00007 510 697 Calmodulin-binding Proteins AT2G36910 28.571 9.28e-08 54.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc181389g00007 K08711 - gmx:100779615 1794.25