Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc181388g00007 ATGGAACCGTCAGGATTCCAGAGAACACATATGAGCAATAGCATGGAACCTAGAAATGAATTTCACCATGGATCACACTCAGTAACACATGACTATATGGATGGCAGTCATACCAACAGAAGACCCCCAGACCTCAATAAATCAGAAGTTAAACCTGTACTTAATTACTCCATTCAGACTGGTGAGGAATTTGCACTTGAATTTATGAGAGATAGGGTGAATCTTGGGAAACCTGTATTTTCGAATGTTGGTGATTCCAATTATACAACGGGATATATGGAGCTGCAAGGCATGTTGGGCATGGGTCATGCTGGATCTGGAAGTGGATCAGACATTTCTATGCTCTCGATGGTTGACAAATATCCAAAAGAGTTTGATAAAATGAACGCATCGTTACATGGAGATAGAAGTAATTATGGGTCCATGCGATCAATACCAACTACTTCATTGAATCAAGACAATAGACAATTTGTGCATAGATATGGCTCTTCTCGAGGTTACGATAGCTCATCATTGATGATGAAGTTTCTTTGCAGCTTTGGTGGTAGAATATTACCACGACCCAGTGATGGAAAGCTAAGGTATGTTGGAGGTGATACACGTATTCTTCGCATAAGAAAGGACATAACTTGGCAGGAGCTTATGCACAAAGCATTGCAAATCTATAGTCAGGTTCAAGTAATCAAGTATCAGCTTCCTGGGGAAGATCTTGATGCTTTGGTATCTGTATCATCTGACGAGGATTTGCAGAATATGATGGAGGAGTGTACCCATCTACAAGATAGAGAAGGAACACAGAAGCTTAGGATGTTTTTGTTCTCAATCAGTGATTTGGAGGATGCTCAGTTTGGTCTTGGTAGCATGGGGGATGATTCTGAGATCCAGTATGTTGTTGCTGTTAATGGCATGGACTTGGGATCAAGGAGAAACTCAACCCTGATTGGTGTTGGCTTTTCAGCAGATGATGTGCATGAATTGGATGGACAAACTTTTGAGAGGGAGACTAATAGAGTTGCGGTAGAATCTGAAGGTGTTAGCAATGTCCCCTTGACTAACAATTTTGACTTGCCTTTGGATAGTCAGTCTTCTCAACCAGTGCTATCCACGGCCCCAAATTCCTATGGAACCTATCCTCTGTTTCATAGTGACCAAATCATGCACCAAGAGGAGGCAAGAGGTCAACATGGCCTTAATCCTGCTTATATGCCTGTTGTTGGAGAGACTCCTATTGCAATGCCCACACAGGTGGTTATTAATCCACAAGGGGTTTTGAATGACATCTATCCACCTAGTGGATTACACGTCCAAAGTCCAGAAATACCTACAACTCTGATGGCAAATACTTCAATTCAACAAGGAATTGACCCTGGCAAAACTTTCTCCTTAGAAACACCACTCCCAGCTCCTTTGCAACCGTTTGATGGTTACCCGAAAAATAATCTTCCTGATGTATCAGTTGCAGTTACTGTGCTAGAGGGGCATTCATTCCCTCCAACTAAAAGGGAGCAGCTTCAGGATAATGAAGTGGCTTCTTCTACATCTAGCAGTACCTTTGGTCCAACTTACGTTGATTCTCACTCCAATGCAGTTGACTTGAGTTGTCTTCACCCTCCTCCTCTTCCCAAAAGAGTTTACTATTCAGAAAGAATTCCGAGGGAGCAAATAGAGTTGCTGAATCGGTCTTCTAAGTCTGATGATGCACATGGTTCTCAGTTTAATGTGTCAGAGTTACTTACTGAAGTCAACCCAACAGAATCACTTACAAAATCTGGTGAAAACTTGAACGATGGAAATCTGTCAAATCTAACTGAGTATTCGAAGGTTGCAGCAAAACCCTTGCAATCAGATGGAAATACAATTGATAATGGGGCTGTTAAACATCAAGAGCAATTGCCTGATCCAAGCGGTCAGCCGAAGTCAAAGTTGAGTGAGCATGTAAAGCCCGAGTTGAAGCAGGTGTTGGCCAATAATGAAGGAAGCATAGATGCAATAAATACGGATAGCGTTCTTAAGTTGGAAACTGAAATTAATAATAAGGATACCCATAACAAACCCCTGCTTGGTGAGAAGAAGGGCAGTAAGTCAGACTTAACTACTATGCAACAGGTTCCTTCTGTTAAGCAACATGAGGATCCAGCATCCAATCTTCCAGATATTGATTGGGGTGGTGTTTCTGTGAAGGACTCTAAGGATGATTCTGTTGTGCAAGGATTGCCTGTTTCTGTAAATGGGAATGCTACGACTAATGGTGATTCACAGCATTATCCTTCAAATGTTTCCAAAGAAGGACAAGGTGAGATGGGAAAGGTGGAAGGAGATAATAGAACTCAACATGTTATGCCTCTACCAGCTGAAGAAAAATATCAGAATGACTTACATGGAAGAATTGGAACTGAAACAGCTGTTCCTGACTTAAACTATGATCATTCCCAATTGAATGAAGCTGAAAGTATGCAGTTTGGTGCTATGATGGAAAATGCAAGGGCACAAGAGTCAGAATTTGAGGATTCATTGGTTGAAGCAAGAAAGAGTGCTCTGCCTCCACTTGATCCTTCTTTAGGGGATATTGATATGAGCGGCGTGCAGGTAATAATGAACGAAGATCTTGAAGAGCTTAAGGAACTGGGTTCTGGTACCTTCGGGACTGTGTATCATGGAAAATGGCGAGGAACAGATGTCGCAATTAAAAGAATAAAGAAAAGCTGCTTCACTGGTCGATCATCTGAGCAAGAGAGACTGACTGTAGAATTCTGGCGGGAAGCTGACATTCTTTCCAAGCTTCATCATCCAAATGTGGTGGCATTTTATGGTGTGGTTCAGGATGGACCAGGTGGAACAATGGCCACTGTTACAGAGTTCATGGTGGATGGTTCCCTTAGGCATGTGTTACTTCGTAAGGACAGGTATCTTGATCGTCGCAAGAGACTGATTATTGCAATGGATGCAGCTTTTGGAATGGAATATTTGCACTCAAAGAATATCGTGCATTTTGACTTAAAATGTGATAATTTGCTTGTTAACTTGAAAGATCCTTTACGGCCAATATGCAAGGTGGGTGATTTTGGATTGTCAAAAATCAAACGAAATACCTTGGTTTCTGGTGGGGTACGGGGGACTCTACCATGGATGGCACCAGAGCTCCTGAACGGTAGCAGCAACAAGGTCTCAGAAAAGGTTGACGTGTTTTCATTTGGCATTGTATTATGGGAGATTCTGACAGGGGAGGAGCCATACGCGAATATGCACTACGGTGCAATTATAGGTGGAATTGTGAATAACACATTGAGGCCAACAATTCCAAGTTATTGTGACAATGAATGGAGAACACTGATGGAGCAATGTTGGGCGCCTAACCCTGCAGTTCGGCCTTCCTTCACCGAAATTGCCAGTCGGTTGCGTGTAATGTCGGCGGCAGCTAGCCAAACCAAAACACAGGGCCACAAGGCATCTAAGTGA 3456 0.4251 MEPSGFQRTHMSNSMEPRNEFHHGSHSVTHDYMDGSHTNRRPPDLNKSEVKPVLNYSIQTGEEFALEFMRDRVNLGKPVFSNVGDSNYTTGYMELQGMLGMGHAGSGSGSDISMLSMVDKYPKEFDKMNASLHGDRSNYGSMRSIPTTSLNQDNRQFVHRYGSSRGYDSSSLMMKFLCSFGGRILPRPSDGKLRYVGGDTRILRIRKDITWQELMHKALQIYSQVQVIKYQLPGEDLDALVSVSSDEDLQNMMEECTHLQDREGTQKLRMFLFSISDLEDAQFGLGSMGDDSEIQYVVAVNGMDLGSRRNSTLIGVGFSADDVHELDGQTFERETNRVAVESEGVSNVPLTNNFDLPLDSQSSQPVLSTAPNSYGTYPLFHSDQIMHQEEARGQHGLNPAYMPVVGETPIAMPTQVVINPQGVLNDIYPPSGLHVQSPEIPTTLMANTSIQQGIDPGKTFSLETPLPAPLQPFDGYPKNNLPDVSVAVTVLEGHSFPPTKREQLQDNEVASSTSSSTFGPTYVDSHSNAVDLSCLHPPPLPKRVYYSERIPREQIELLNRSSKSDDAHGSQFNVSELLTEVNPTESLTKSGENLNDGNLSNLTEYSKVAAKPLQSDGNTIDNGAVKHQEQLPDPSGQPKSKLSEHVKPELKQVLANNEGSIDAINTDSVLKLETEINNKDTHNKPLLGEKKGSKSDLTTMQQVPSVKQHEDPASNLPDIDWGGVSVKDSKDDSVVQGLPVSVNGNATTNGDSQHYPSNVSKEGQGEMGKVEGDNRTQHVMPLPAEEKYQNDLHGRIGTETAVPDLNYDHSQLNEAESMQFGAMMENARAQESEFEDSLVEARKSALPPLDPSLGDIDMSGVQVIMNEDLEELKELGSGTFGTVYHGKWRGTDVAIKRIKKSCFTGRSSEQERLTVEFWREADILSKLHHPNVVAFYGVVQDGPGGTMATVTEFMVDGSLRHVLLRKDRYLDRRKRLIIAMDAAFGMEYLHSKNIVHFDLKCDNLLVNLKDPLRPICKVGDFGLSKIKRNTLVSGGVRGTLPWMAPELLNGSSNKVSEKVDVFSFGIVLWEILTGEEPYANMHYGAIIGGIVNNTLRPTIPSYCDNEWRTLMEQCWAPNPAVRPSFTEIASRLRVMSAAASQTKTQGHKASK 1151
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc181388g00007 1151 MobiDBLite consensus disorder prediction 743 768 - -
Stsc181388g00007 1151 FunFam Octicosapeptide/phox/Bem1p domain kinase superfamily protein 862 956 - -
Stsc181388g00007 1151 SUPERFAMILY CAD & PB1 domains 189 277 - -
Stsc181388g00007 1151 PRINTS Tyrosine kinase catalytic domain signature 1059 1081 IPR001245 GO:0004672|GO:0006468
Stsc181388g00007 1151 PRINTS Tyrosine kinase catalytic domain signature 951 964 IPR001245 GO:0004672|GO:0006468
Stsc181388g00007 1151 PRINTS Tyrosine kinase catalytic domain signature 988 1006 IPR001245 GO:0004672|GO:0006468
Stsc181388g00007 1151 PRINTS Tyrosine kinase catalytic domain signature 1103 1125 IPR001245 GO:0004672|GO:0006468
Stsc181388g00007 1151 MobiDBLite consensus disorder prediction 613 644 - -
Stsc181388g00007 1151 Coils Coil 824 844 - -
Stsc181388g00007 1151 MobiDBLite consensus disorder prediction 559 578 - -
Stsc181388g00007 1151 Pfam Protein tyrosine and serine/threonine kinase 870 1132 IPR001245 GO:0004672|GO:0006468
Stsc181388g00007 1151 FunFam Octicosapeptide/phox/Bem1p domain kinase superfamily protein 957 1149 - -
Stsc181388g00007 1151 Pfam PB1 domain 190 273 IPR000270 GO:0005515
Stsc181388g00007 1151 ProSiteProfiles Protein kinase domain profile. 869 1134 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc181388g00007 1151 MobiDBLite consensus disorder prediction 680 731 - -
Stsc181388g00007 1151 MobiDBLite consensus disorder prediction 694 709 - -
Stsc181388g00007 1151 CDD STKc_MAP3K-like 875 1132 - -
Stsc181388g00007 1151 MobiDBLite consensus disorder prediction 500 522 - -
Stsc181388g00007 1151 Gene3D - 192 275 - -
Stsc181388g00007 1151 MobiDBLite consensus disorder prediction 1 48 - -
Stsc181388g00007 1151 FunFam Octicosapeptide/phox/Bem1p domain kinase superfamily protein 193 275 - -
Stsc181388g00007 1151 SUPERFAMILY Protein kinase-like (PK-like) 860 1131 IPR011009 -
Stsc181388g00007 1151 ProSitePatterns Serine/Threonine protein kinases active-site signature. 994 1006 IPR008271 GO:0004672|GO:0006468
Stsc181388g00007 1151 MobiDBLite consensus disorder prediction 743 760 - -
Stsc181388g00007 1151 MobiDBLite consensus disorder prediction 497 522 - -
Stsc181388g00007 1151 Gene3D Transferase(Phosphotransferase) domain 1 957 1151 - -
Stsc181388g00007 1151 Gene3D Phosphorylase Kinase; domain 1 862 956 - -
Stsc181388g00007 1151 SMART PB1_new 188 275 IPR000270 GO:0005515
Stsc181388g00007 1151 PANTHER SERINE-THREONINE PROTEIN KINASE 218 1133 - -
Stsc181388g00007 1151 MobiDBLite consensus disorder prediction 15 47 - -
Stsc181388g00007 1151 MobiDBLite consensus disorder prediction 564 578 - -
Stsc181388g00007 1151 CDD PB1_UP2 177 273 - -
Stsc181388g00007 1151 ProSitePatterns Protein kinases ATP-binding region signature. 875 900 IPR017441 GO:0005524
Stsc181388g00007 1151 SMART serkin_6 869 1135 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc181388g00007 Stsc-Chr181388 47118 54162 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc181388g00007 3 575 MAP Kinase Kinase Kinase AT1G16270 38.720 7.24e-98 335
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK TKL-Pl-6 Stsc181388g00007 PK_Tyr_Ser-Thr 2.7e-62 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc181388g00007 - - aip:107612789 1515.36