Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc181388g00006 ATGGAACCTAGACATGGTGAATTCCAGCCTGGGTTGCCGCCAATAATGCCGGATCGACCGGATGACATGCATACAATCAGAAGACCACCTAACGTTGGTATGACACAAGCAAAACCTGTGCTTAATTTCTCCATACAGACAGGTGAGGAATTTGCTCTCGAATTTATGAGAGATAGGGTGAATCTCGGGAAGCCTATGTTTCCGAATGTAAGTGACCCCAATTTCACACCCAGTTATATGGATCTAAAAGGCATTTTAGGAATTAGTCATCCAGCATCAGAAAGTGGATCAGACATTTCCATGCTTTCAATGGTTGACAAATATCCAAAAGAGTTCGATAGAATGAACACATCATTGCAGGGAGACAAAAGCAATTATGGGTCAATTCGATCAATACCACGAACTTCTATGACTCAGGACAGTAGACAACTTGTGCAGAAGTATGGCTCTTCTCGAGGTTCTGAAAGCTCATCAATGCTATTGAAGTTCCTTTGTAGCTTTGGTGGTAGAATATTACCTCGACCAAGTGATGGAAAGCTGAGGTATGTTGGAGGTGATACACGTATTCTTCGTATAAGAAAGAACATATCTTGGCAGGAGCTATTGCAGAAAGCATTGTTAATCTATAATCAGGTTCATGCAATCAAGTATCAGCTTCCGGGGGAAGATCTTGATGCTTTGGTATCTGTGTCATGTGATGAGGATTTGCAGAATATGATGGAAGAATGTAACCATCTAGAAGATAGAGAAGGATCACAAAAGCCTAGGATGTTTTTGTTCTCATTGAGTGATTTGGAGGACGCTCAGTTTGGTCTCAATGGCTTGGGTGATGATTCTGAGATCCAATATGTTGTTGCTGTTAACGGCATGGACTTGGGATCAAGAAGAAACTCAACCCTGATCGGCATGAACTTTTCAGCAAATGATCTGCATGATTTGGACAGGCAGAACATTGAAAGGGAGACCAGTAAAGTTGCTGTTGAATCTGTAGGTGTCAACAATTCTCTCTTGAATAACAAATTTGACTCATCTCCAAATGGGGAATCCTCACAACCAGTGCTACCTACTTCCTCAAATTCTTATGTACAGTTTCATGGTGAACATGCAATGCACCATGGGGATCCTGTTGGTCAATATCATGTTACCAGATCTGTTATTGAAGACATTCCTACTACTATGCCTCCTCGTGCATTGATTAATCAAGATGGCGTTTTTAGCAAAGGTCATCCACCGGTCGGATTACCTGTACATAATTCTGAAATACCACCAGTGGTCACAAAAAAGAAGGGTGATAATTTGATCGAACAAGCAAGCGACCAAGGTAAAGTTATATCCATGGAAACACCATCCTCGGCTCCTACTCAACTCTTTGATGGTTACATGAAAAATAATTTTCCTGAAGCAACAGCTGCAGTTACTATGCCAGAGGGCTATCAGATTCCTCCGACAAAAAAGGATCAGCCGCAGAACTATGAAGATGATTTGCTGAATCGGTCCACCAAGTCAGATGATTTACATGGTTCTCAGTTTAACATTTCGGATTTACTTTCTGAGGCAAAGCCCTCAGATTCAGTTACAGGATCTGACGACAACTTGCATAATGGGAATCAGCCTCTCCGATCTGAGGAGTTGGGTGTTGCAGCGAAGCCTTTGCATGCTGATGGCTATCCTATTGATAATGGGACTGCCAAACATCAAATATACAAACATTTTCCTGATCCAAGTAGTCAGTTGAAGTCAAAACTAACCGAGCATGTGAATTCCGAGTTGAAGAAGGTTCCCTCTGCTAAGCACCTTGAAGATCCAGCTTCATATCTTCCTGAGGTCGATTGGGGCGATACCACTGTTACAGAATCTAATGAAAGTCGCATGGTGCAAGGACTACCTGTTTCTCTAAATGGAAACCAAACTACCAAAGATGATTTTCAACCTCCTTCAAGTGTTCCTTCAAAAACATCACAAGGTGACATTCTAATTGATATTGATGATCGATTTCCCCGTGAAGTGCTTAGTGACATGTATAAAGCTTTACTTGAAGAAGGTTTCTCTGGCCGGCATCCATTAACCTCGGATGGAGTGGGTCTAAGCATAAATGTGAAAAATCACGAACCTACACCTTGGGAATATTTTCACAAACTGGCACAAGAAGGGCTCAATAATGTCTCTCTCATTGACCAGGATCATGTTGGGTTTTCACCTGCAGTAGAAAATGTGGAAGGAGATGGTGGAGCTCAACTTGTTACACCTCTAACAACTGGTGAAATGAATCAGAAAGACTTGCATGGAAGGGTTGGAACAGAAACCACCATTCTAAAGCCAAATGATCCGCTAGTGAAGGATACTGAAAGTATGCAATTTAATGCTATGATGGAAAACATAAGAGCACAGGAATCAGGTTTTGAGGATGGCAATTTTGACACAAGAAATCGTACACCTCCTGTTGATCCTCCCTTAAGTGATATTGACCCAAATTCCTTGCAGGTCATAATGAATGAAGATCTTGAAGAGCTGAAGGAGCTGGGTTCTGGTACCTTTGGGACTGTGTATCATGGAAAATGGCGTGGAACAGATGTTGCCATCAAAAGAATAAAGAAAAGCTGTTTCACTGGTCGATCGTCAGAGCAAGAGAGATTGACTGTAGAATTCTGGCGGGAAGCTGATATTCTTTCCAAGCTTCATCATCCAAATGTTGTGGCATTTTATGGTGTAGTTCAGGATGGACCAGGTGGAACAATGGCCACTGTTACAGAGTACATGGTAGATGGTTCTCTTCGTCATGTCTTGCTTCGCAAAGATAGGTATCTAGATCGTCGCAAGAGACTGATAATTGCTATGGATGCAGCTTTTGGAATGGAGTATCTACACTCGAAAAATATTGTTCATTTTGACTTAAAATGTGATAATTTGCTCGTGAACTTGAAAGATCCTTTACGGCCAATATGCAAGGTTGGTGATTTTGGCTTGTCAAAAATTAAGCGGAATACCTTGGTCTCCGGTGGTGTGCGGGGGACTCTTCCTTGGATGGCACCGGAGCTGCTGAATGGTAGCAGCAACAAGGTGTCAGAAAAGGTTGATGTTTTCTCCTTTGGCATAGTATTATGGGAGATTCTAACTGGAGAGGAGCCCTATGCCAATATGCACTATGGTGCCATCATAGGTGGGATTGTTAACAACACATTAAGGCCAACAATTCCCAGTTACTGTGACTCAGAATGGCGAACGCTGATGGAGCAGTGCTGGGCACCAAATCCCGCAGTCAGACCTTCCTTCACAGAAATCGCACGTAGATTGCGGGTGATGTCTGCGGCTGCTAGCCAAGCAAAGGCGCAGGGCCAAAAGGCGCCTAAATGA 3351 0.427 MEPRHGEFQPGLPPIMPDRPDDMHTIRRPPNVGMTQAKPVLNFSIQTGEEFALEFMRDRVNLGKPMFPNVSDPNFTPSYMDLKGILGISHPASESGSDISMLSMVDKYPKEFDRMNTSLQGDKSNYGSIRSIPRTSMTQDSRQLVQKYGSSRGSESSSMLLKFLCSFGGRILPRPSDGKLRYVGGDTRILRIRKNISWQELLQKALLIYNQVHAIKYQLPGEDLDALVSVSCDEDLQNMMEECNHLEDREGSQKPRMFLFSLSDLEDAQFGLNGLGDDSEIQYVVAVNGMDLGSRRNSTLIGMNFSANDLHDLDRQNIERETSKVAVESVGVNNSLLNNKFDSSPNGESSQPVLPTSSNSYVQFHGEHAMHHGDPVGQYHVTRSVIEDIPTTMPPRALINQDGVFSKGHPPVGLPVHNSEIPPVVTKKKGDNLIEQASDQGKVISMETPSSAPTQLFDGYMKNNFPEATAAVTMPEGYQIPPTKKDQPQNYEDDLLNRSTKSDDLHGSQFNISDLLSEAKPSDSVTGSDDNLHNGNQPLRSEELGVAAKPLHADGYPIDNGTAKHQIYKHFPDPSSQLKSKLTEHVNSELKKVPSAKHLEDPASYLPEVDWGDTTVTESNESRMVQGLPVSLNGNQTTKDDFQPPSSVPSKTSQGDILIDIDDRFPREVLSDMYKALLEEGFSGRHPLTSDGVGLSINVKNHEPTPWEYFHKLAQEGLNNVSLIDQDHVGFSPAVENVEGDGGAQLVTPLTTGEMNQKDLHGRVGTETTILKPNDPLVKDTESMQFNAMMENIRAQESGFEDGNFDTRNRTPPVDPPLSDIDPNSLQVIMNEDLEELKELGSGTFGTVYHGKWRGTDVAIKRIKKSCFTGRSSEQERLTVEFWREADILSKLHHPNVVAFYGVVQDGPGGTMATVTEYMVDGSLRHVLLRKDRYLDRRKRLIIAMDAAFGMEYLHSKNIVHFDLKCDNLLVNLKDPLRPICKVGDFGLSKIKRNTLVSGGVRGTLPWMAPELLNGSSNKVSEKVDVFSFGIVLWEILTGEEPYANMHYGAIIGGIVNNTLRPTIPSYCDSEWRTLMEQCWAPNPAVRPSFTEIARRLRVMSAAASQAKAQGQKAPK 1116
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc181388g00006 1116 SMART serkin_6 834 1100 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc181388g00006 1116 SMART PB1_new 175 262 IPR000270 GO:0005515
Stsc181388g00006 1116 MobiDBLite consensus disorder prediction 800 821 - -
Stsc181388g00006 1116 PANTHER SERINE-THREONINE PROTEIN KINASE 205 1098 - -
Stsc181388g00006 1116 ProSitePatterns Protein kinases ATP-binding region signature. 840 865 IPR017441 GO:0005524
Stsc181388g00006 1116 MobiDBLite consensus disorder prediction 633 654 - -
Stsc181388g00006 1116 ProSitePatterns Serine/Threonine protein kinases active-site signature. 959 971 IPR008271 GO:0004672|GO:0006468
Stsc181388g00006 1116 SUPERFAMILY CAD & PB1 domains 176 263 - -
Stsc181388g00006 1116 ProSiteProfiles Protein kinase domain profile. 834 1099 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc181388g00006 1116 Pfam Protein tyrosine and serine/threonine kinase 835 1097 IPR001245 GO:0004672|GO:0006468
Stsc181388g00006 1116 Gene3D Phosphorylase Kinase; domain 1 827 921 - -
Stsc181388g00006 1116 FunFam Octicosapeptide/phox/Bem1p domain kinase superfamily protein 180 262 - -
Stsc181388g00006 1116 PRINTS Tyrosine kinase catalytic domain signature 916 929 IPR001245 GO:0004672|GO:0006468
Stsc181388g00006 1116 PRINTS Tyrosine kinase catalytic domain signature 1024 1046 IPR001245 GO:0004672|GO:0006468
Stsc181388g00006 1116 PRINTS Tyrosine kinase catalytic domain signature 1068 1090 IPR001245 GO:0004672|GO:0006468
Stsc181388g00006 1116 PRINTS Tyrosine kinase catalytic domain signature 953 971 IPR001245 GO:0004672|GO:0006468
Stsc181388g00006 1116 MobiDBLite consensus disorder prediction 1 23 - -
Stsc181388g00006 1116 SUPERFAMILY Protein kinase-like (PK-like) 819 1096 IPR011009 -
Stsc181388g00006 1116 FunFam Octicosapeptide/phox/Bem1p domain kinase superfamily protein 922 1114 - -
Stsc181388g00006 1116 Gene3D Transferase(Phosphotransferase) domain 1 922 1116 - -
Stsc181388g00006 1116 MobiDBLite consensus disorder prediction 477 508 - -
Stsc181388g00006 1116 CDD STKc_MAP3K-like 840 1097 - -
Stsc181388g00006 1116 FunFam Octicosapeptide/phox/Bem1p domain kinase superfamily protein 827 921 - -
Stsc181388g00006 1116 MobiDBLite consensus disorder prediction 487 501 - -
Stsc181388g00006 1116 MobiDBLite consensus disorder prediction 519 538 - -
Stsc181388g00006 1116 CDD PB1_UP2 164 260 - -
Stsc181388g00006 1116 Pfam PB1 domain 177 260 IPR000270 GO:0005515
Stsc181388g00006 1116 Gene3D - 179 261 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc181388g00006 Stsc-Chr181388 29686 36861 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc181388g00006 37 1116 MAP Kinase Kinase Kinase AT1G16270 48.616 0.0 902
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK TKL-Pl-6 Stsc181388g00006 PK_Tyr_Ser-Thr 1.2e-62 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc181388g00006 - - aip:107612789 1947.55