Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc181387g00017 ATGATGACTCCAAATTTGAACTTGGAACCTGAAAATTACTCAGAAGGCAGCAGCCAAGTAGCTTCGAGTGTATCGCTCCAAGAAACATCCCCTGAGCTCAACAAGGAAAGCACCACTGCTTCCTCCTGTCTTACAAATCTTACTAAGGCCGAAGGTGATCCTGGCTCCGTCACCCTTGACTTGACACTCAACTTCAATGCAAGTGATGGGGAGTTAAAGGGTACTAGTGATGCTAGCAGTGAAGTGGGACCAGAAGCTTTTGCTTCAGGATCAGCAAGTCCCAGGGTGTTCTCTTGTAATTACTGCAGGAGGAAGTTCTTTAGCTCACAGGCGCTTGGGGGTCACCAGAATGCTCACAAAAGGGAGAGGACAATGGCGAAGCGCGCAATGCGAATGGGGATGTTCACTGAGAGGTATACAAGCTTAGCATCTCTGCCTCTTCATGGTTCACCTTTCCGGTCTCTTGGCATAGAGGCTCATTCTGCAATGCACCATAGACCCATGCCACAAGTGAGGGCTCCTGATTTGAGAGCCGGGGCTAAATTTGAGAGAAACCATTTCGGATCACCGATGTTCATGGAAGATGAAGATGTTGGGTTGTTTTGGCCAGGCAGTTTCCGACAGGTCAACCAGCAAGCCGGTATTAACATGGTACATGCTCAAACATCCAACACTAACTATGCTCCTATGGGGCCTCCTCAACCGAAAGCATCGACATCCCCGGATCTCACCCTGAAGCTTTAG 744 0.4906 MMTPNLNLEPENYSEGSSQVASSVSLQETSPELNKESTTASSCLTNLTKAEGDPGSVTLDLTLNFNASDGELKGTSDASSEVGPEAFASGSASPRVFSCNYCRRKFFSSQALGGHQNAHKRERTMAKRAMRMGMFTERYTSLASLPLHGSPFRSLGIEAHSAMHHRPMPQVRAPDLRAGAKFERNHFGSPMFMEDEDVGLFWPGSFRQVNQQAGINMVHAQTSNTNYAPMGPPQPKASTSPDLTLKL 247
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc181387g00017 247 PANTHER C2H2 AND C2HC ZINC FINGERS SUPERFAMILY PROTEIN 17 191 IPR044246 GO:0009788
Stsc181387g00017 247 MobiDBLite consensus disorder prediction 223 247 - -
Stsc181387g00017 247 ProSiteProfiles Zinc finger C2H2 type domain profile. 97 124 IPR013087 -
Stsc181387g00017 247 MobiDBLite consensus disorder prediction 1 49 - -
Stsc181387g00017 247 FunFam Zinc finger protein 2 75 143 - -
Stsc181387g00017 247 SUPERFAMILY beta-beta-alpha zinc fingers 94 125 IPR036236 -
Stsc181387g00017 247 MobiDBLite consensus disorder prediction 73 92 - -
Stsc181387g00017 247 ProSitePatterns Zinc finger C2H2 type domain signature. 99 119 IPR013087 -
Stsc181387g00017 247 Gene3D Classic Zinc Finger 88 143 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc181387g00017 Stsc-Chr181387 75444 78470 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc181387g00017 91 247 C2H2 Transcription Factor Family AT1G66140 45.745 9.47e-42 141
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Stsc181387g00017 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc181387g00017 - - gmx:100775305 378.252