Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc181387g00016 ATGATCACTATCTCCTTGTTATACTTGATCACTTTGACAAAGCTTTCAATCTCCCAAGAAGATAAAAGATATGAAGTGTGCGCTAAGGCTTACAGCTGCGGAGAAATAGCCAACATCTACTATCCTTTCTGGGGAGGGGGCAGGCCAAGCTATTGCGGCCTCAGCCAGCAATTCAAGCTCAGTTGTGATGCTAATCGCAACACCTCCATTCAACTTAACTCCCAGACTTTTCATGTGCTGAATATCGATCAAGCTCTTTGCAACATAACTCTAGTTAGAACTGGGATTGCCTATGATCACTGCTCTTCTCATTTAACCAACACTTCCTTAGACACAAGCCACTTTCGCTTCTTGCCAAACGTTAGGAACATCACAATCTTCTATGACTGCTCTGCCAACAACAATGAAACAATACACTCTTTCCATTGCCAGGATGATCCTAAAAAGCAAGCTTTCTATGGGGATTTGGGAGCTGTAGAGGCTCAGAACTGCCAAGGAGTTCATGTGGAAGTGCAGGCAACACAAGAAGTGAGAGCTAATGATTATGGAATTGAAGGTTTGAATAAAGCCTTGAGTGCAGGGTTTGATGTGAATTATAGTTCAGCTTTGGACATTCAAAGATGCTTAGGATGCCTCTCGACTAAAGGAATATGCGGATCCAAAGATGAGTTTCAGTTTACCTGCTATTGCCCTGATGGAACTGATCATGCTTTTGATTGTTCTTATCATCATAGTGTTGCTGCTGCTGTGCTTAGTGCAGTTACATTAGGCGTTGCCTTTAATATCTATTATCGTCGAAGGAAGAAGAATTTTCAAGCTGTATCATTTGTACAATGTCGCAACATCTCTTCTTATCTAAAAGACACTGAGAAGGGACGTGAAAAATACTCTGGACTCCAATTCTTCTCCTATAGAGAACTTCAAGAGGCCACAAACAACTTTAATTCAAACAGGGAACTAGGAGATGGAGGCTTTGGGAAAGTGTATTTTGGAAAACTTGGAGACGGCCGTTTCGTTGCGGTGAAAAAGATGTATGAAAACAATTACAGGACAGTAGAACAATTTATTAACGAAATTGAGATCTTAACCAGCTTACGCCACCAGAATTTGGTGTCACTGTATGGATGTAATTCTGGCCACAGCAATGAACTAATGCTTGTATATGAATATGTTCCTAATGGAACAGTTGCAGATCATCTCCATGGCGAGAAAGCAAAATCCGGAGCTCTCTCTTGGGATATCAGAATGAACATTGCTATTGAGACTGCTAGTGCATTGGTATATCTTCATGCTTCAGACATCATTCACAGAGATGTTAAAACCAATAATATCCTCCTTGATGATCACTTTAGAGTCAAAGTAGCTGATTTTGGACTCTCAAGACTATTTCCAAACCATGTAACTCACGTTTCGACAGCGCCTCAAGGCACACCTGGCTATGTTGATCCAGAGTACCATGAATGCTACCAGCTGACGGATAGAAGTGATGTTTACAGCTTTGGAGTTGTGCTGATTGAGCTAATATCTTCAATGTGTGCTGTTGACCTAACAAGGCATAGGCATGAGATCAATTTGTCAAACATGGCCATTAAGAAGATTCAGAGAGGTGCATTGCATGAGATTGTAGACAAAAGCCTTGGATTCGAATCGGATTTGAGGGTAAGGAAGATGATCAATAGTGTTGCAGAGTTGGCATTTCAGTGCTTGCAGAGTTCTAAGGATATGAGGCCTTCAATGGTGCAAGTGTTGGATACTTTGAAGGATATACAAAGCGATGGGAAATATGAAAGCAAACCAGAGGTGATGGATTTATCAATAGAAGAAGAAGAAAACGGTGCAGCTTTGCTCAATAACGAACCACCTCCACCTTCCCCTGATTCAAATTTGTTGACCACATAA 1899 0.4123 MITISLLYLITLTKLSISQEDKRYEVCAKAYSCGEIANIYYPFWGGGRPSYCGLSQQFKLSCDANRNTSIQLNSQTFHVLNIDQALCNITLVRTGIAYDHCSSHLTNTSLDTSHFRFLPNVRNITIFYDCSANNNETIHSFHCQDDPKKQAFYGDLGAVEAQNCQGVHVEVQATQEVRANDYGIEGLNKALSAGFDVNYSSALDIQRCLGCLSTKGICGSKDEFQFTCYCPDGTDHAFDCSYHHSVAAAVLSAVTLGVAFNIYYRRRKKNFQAVSFVQCRNISSYLKDTEKGREKYSGLQFFSYRELQEATNNFNSNRELGDGGFGKVYFGKLGDGRFVAVKKMYENNYRTVEQFINEIEILTSLRHQNLVSLYGCNSGHSNELMLVYEYVPNGTVADHLHGEKAKSGALSWDIRMNIAIETASALVYLHASDIIHRDVKTNNILLDDHFRVKVADFGLSRLFPNHVTHVSTAPQGTPGYVDPEYHECYQLTDRSDVYSFGVVLIELISSMCAVDLTRHRHEINLSNMAIKKIQRGALHEIVDKSLGFESDLRVRKMINSVAELAFQCLQSSKDMRPSMVQVLDTLKDIQSDGKYESKPEVMDLSIEEEENGAALLNNEPPPPSPDSNLLTT 632
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc181387g00016 632 FunFam receptor-like protein kinase FERONIA 279 390 - -
Stsc181387g00016 632 SMART serkin_6 314 591 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc181387g00016 632 ProSiteProfiles Protein kinase domain profile. 314 589 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc181387g00016 632 Pfam Wall-associated receptor kinase C-terminal 160 233 IPR032872 -
Stsc181387g00016 632 Pfam Wall-associated receptor kinase galacturonan-binding 27 92 IPR025287 GO:0030247
Stsc181387g00016 632 PANTHER LEAF RUST 10 DISEASE-RESISTANCE LOCUS RECEPTOR-LIKE PROTEIN KINASE-LIKE 1.4 6 627 IPR044652 GO:0004672
Stsc181387g00016 632 SUPERFAMILY Protein kinase-like (PK-like) 296 586 IPR011009 -
Stsc181387g00016 632 Gene3D Transferase(Phosphotransferase) domain 1 391 602 - -
Stsc181387g00016 632 Gene3D Phosphorylase Kinase; domain 1 285 390 - -
Stsc181387g00016 632 MobiDBLite consensus disorder prediction 609 632 - -
Stsc181387g00016 632 FunFam Wall-associated receptor kinase-like 20 391 599 - -
Stsc181387g00016 632 ProSitePatterns Serine/Threonine protein kinases active-site signature. 434 446 IPR008271 GO:0004672|GO:0006468
Stsc181387g00016 632 ProSitePatterns Protein kinases ATP-binding region signature. 320 343 IPR017441 GO:0005524
Stsc181387g00016 632 MobiDBLite consensus disorder prediction 618 632 - -
Stsc181387g00016 632 Pfam Protein kinase domain 315 584 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc181387g00016 Stsc-Chr181387 60470 63367 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc181387g00016 29 627 Receptor kinase-like Gene Family AT1G25390 44.498 1.38e-149 444
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_WAK_LRK10L-1 Stsc181387g00016 Pkinase 7.3e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc181387g00016 - - ahf:112792504 1042.72