Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc181387g00008 ATGAATGAGGCCAAGTTATTGGCTCGTGTACAGCACCGGAATGTGGTGAATTTGTTGGGCTATTGTGCCCATGACGGAGAGAAGCTTCTTGTCTATGAGTATGTTCCTCATGAGAGCCTTGACAAATTTCTATTCAAGGCGCACAAGAGGGGGGAGCTAGATTGGAAAAGGAGGTTGGGGATAATAACAGGGGTGGCAAAGGGGTTGCTTTATCTTCACGAAGACTGTCACCATTGCATCATCCACCGTGACATCAAAGCCAGTAACATCTTGCTCGATGACAAATGGCAGCCGAAAATTGCAGACTTCGGCATGGCCCGACTCTTCCCCGAAGATCAGAGCCAGGTCAATACTCGTGTTGCTGGAACCAATGGTTATATGGCACCTGAATATGTAATGCATGGACAGTTGTCTGCCAAGGCTGACGTATTTAGCTATGGAGTGTTGGTGTTGGAGTTGATCAGTGGCCAAAGAAACTCTTCCTTCAATTTGGATGTTGATGCACAGAATCTACTTGATTGGGTATACAAGCTGTACAAGAAGGGGAGGAGCTTGGAAATTGTGGATTCTGTGTTAGCATCCACAACAGAAGCAGAACAAGTAGCTATGTGCATTCAGCTTGGTCTGCTCTGCACTCAGGGCGACCCGAAGCTGCGACCGGACATGAGGCGCATTGTGGTCATGCTGTCTAGGAAGCCAGGCCATATGGAAGAACCTACCAGACCTGGTGTGCCTGGTTCCAGATACAGGAGACGACCCAGGCAGCATGTCGGATTGTCCTCAGCCACTGCTGGTACCTCGGATTCTCAGACTGATGATTCAAGTAGCAACACAACCTCTGTTACTGCTACTAGTGCTACTACTCCAACTGCAACTAGAACTAGAACTAGAACAAGAACAAGAACATACTCGGGTGTTGCGGAATCATCGGACCCAAGAGGGAAACAACCAATGGAGGAGGGTTTAGACTAA 972 0.4825 MNEAKLLARVQHRNVVNLLGYCAHDGEKLLVYEYVPHESLDKFLFKAHKRGELDWKRRLGIITGVAKGLLYLHEDCHHCIIHRDIKASNILLDDKWQPKIADFGMARLFPEDQSQVNTRVAGTNGYMAPEYVMHGQLSAKADVFSYGVLVLELISGQRNSSFNLDVDAQNLLDWVYKLYKKGRSLEIVDSVLASTTEAEQVAMCIQLGLLCTQGDPKLRPDMRRIVVMLSRKPGHMEEPTRPGVPGSRYRRRPRQHVGLSSATAGTSDSQTDDSSSNTTSVTATSATTPTATRTRTRTRTRTYSGVAESSDPRGKQPMEEGLD 323
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc181387g00008 323 ProSiteProfiles Protein kinase domain profile. 1 238 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc181387g00008 323 SUPERFAMILY Protein kinase-like (PK-like) 1 247 IPR011009 -
Stsc181387g00008 323 MobiDBLite consensus disorder prediction 229 323 - -
Stsc181387g00008 323 Gene3D Transferase(Phosphotransferase) domain 1 35 239 - -
Stsc181387g00008 323 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 2 284 - -
Stsc181387g00008 323 FunFam Cysteine-rich receptor-like protein kinase 10 36 241 - -
Stsc181387g00008 323 ProSitePatterns Serine/Threonine protein kinases active-site signature. 80 92 IPR008271 GO:0004672|GO:0006468
Stsc181387g00008 323 SMART serkin_6 1 229 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc181387g00008 323 Pfam Protein tyrosine and serine/threonine kinase 1 228 IPR001245 GO:0004672|GO:0006468
Stsc181387g00008 323 Gene3D Phosphorylase Kinase; domain 1 1 34 - -
Stsc181387g00008 323 PIRSF TyrPK_CSF1-R 45 301 - -
Stsc181387g00008 323 PIRSF TyrPK_CSF1-R 1 53 - -
Stsc181387g00008 323 MobiDBLite consensus disorder prediction 259 309 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc181387g00008 Stsc-Chr181387 28938 32064 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc181387g00008 2 244 Receptor kinase-like Gene Family AT4G11530 53.061 9.81e-89 277
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Stsc181387g00008 PK_Tyr_Ser-Thr 1.7e-40 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc181387g00008 - - gmx:100795769 469.159