Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc181387g00007 ATGGACAAGGACAAGGACAAGGACAAATCATCCAACAGTTTTCTTCACAGTCTCGTCAAACACTTCAAATTCAGTTCCAATAAAGAGCGAAGCAATGAAGCTGAAATACAGCAAATGGCTGCGCAGGAGCAGAAGGTCTTTTCCTATGAAAGTTTAGTTGCAGCTACCAAGAATTTCAGTGCTCTTAATAAGCTTGGTGAGGGAGGCTTTGGACCCGTTTACAAGGGGAAGCTTAGTGATGGGAGAGAGATAGCAGTAAAAAAGCTATCACGCACTTCAAATCAAGGGAAGAAAGAGTTCATGAATGAGGCCAAGTTATTGGCTCGTGTACAGCACCGGAATGTGGTGAATTTGTTGGGCTATTGTGCCCATGACGGAGAGAAGCTTCTTGTCTATGAGTATGTTCCTCATGAGAGCCTTGACAAATTTCTATTCAAGGCGCACAAGAGGGGGGAGCTAGATTGGAAAAGGAGGTTGGGGATAATAACAGGGGTGGCAAAGGGGTTGCTTTATCTTCACGAAGACTGTCACCATTGCATCATCCACCGTGACATCAAAGCCAGTAACATCTTGCTCGATGACAAATGGCAGCCGAAAATTGCAGACTTCGGCATGGCCCGACTCTTCCCCGAAGATCAGAGCCAGGTCAATACTCGTGTTGCTGGAACCAATGGTTATATGGCACCTGAATATGTAATGCATGGACAGTTGTCTGCCAAGGCTGACGTATTTAGCTATGGAGTGTTGGTGTTGGAGTTGATCAGTGGCCAAAGAAACTCTTCCTTCAATTTGGATGTTGATGCACAGAATCTACTTGATTGGGTATACAAGCTGTACAAGAAGGGGAGGAGCTTGGAAATTGTGGATTCTGTGTTAGCATCCACAACAGAAGCAGAACAAGTAGCTATGTGCATTCAGCTTGGTCTGCTCTGCACTCAGGGCGACCCGAAGCTGCGACCGGACATGAGGCGCATTGTGGTCATGCTGTCTAGGAAGCCAGGCCATATGGAAGAACCTACCAGACCTGGTGTGCCTGGTTCCAGATACAGGAGACGACCCAGGCAGCATGTCGGATTGTCCTCAGCCACTGCTGGTACCTCGGATTCTCAGACTGATGATTCAAGTAGCAACACAACCTCTGTTACTGCTACTAGTGCTACTACTCCAACTGCAACTAGAACTAGAACTAGAACAAGAACAAGAACATACTCGGGTGTTGCGGAATCATCGGACCCAAGAGGGAAACAACCAATGGAGGAGGGTTTAGACTAA 1272 0.4693 MDKDKDKDKSSNSFLHSLVKHFKFSSNKERSNEAEIQQMAAQEQKVFSYESLVAATKNFSALNKLGEGGFGPVYKGKLSDGREIAVKKLSRTSNQGKKEFMNEAKLLARVQHRNVVNLLGYCAHDGEKLLVYEYVPHESLDKFLFKAHKRGELDWKRRLGIITGVAKGLLYLHEDCHHCIIHRDIKASNILLDDKWQPKIADFGMARLFPEDQSQVNTRVAGTNGYMAPEYVMHGQLSAKADVFSYGVLVLELISGQRNSSFNLDVDAQNLLDWVYKLYKKGRSLEIVDSVLASTTEAEQVAMCIQLGLLCTQGDPKLRPDMRRIVVMLSRKPGHMEEPTRPGVPGSRYRRRPRQHVGLSSATAGTSDSQTDDSSSNTTSVTATSATTPTATRTRTRTRTRTYSGVAESSDPRGKQPMEEGLD 423
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc181387g00007 423 MobiDBLite consensus disorder prediction 359 409 - -
Stsc181387g00007 423 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 21 384 - -
Stsc181387g00007 423 MobiDBLite consensus disorder prediction 329 423 - -
Stsc181387g00007 423 ProSiteProfiles Protein kinase domain profile. 59 338 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc181387g00007 423 CDD STKc_IRAK 65 331 - -
Stsc181387g00007 423 Gene3D Phosphorylase Kinase; domain 1 19 134 - -
Stsc181387g00007 423 Pfam Protein tyrosine and serine/threonine kinase 62 328 IPR001245 GO:0004672|GO:0006468
Stsc181387g00007 423 FunFam Cysteine-rich receptor-like protein kinase 10 136 341 - -
Stsc181387g00007 423 FunFam Cysteine-rich receptor-like protein kinase 10 23 134 - -
Stsc181387g00007 423 SUPERFAMILY Protein kinase-like (PK-like) 44 346 IPR011009 -
Stsc181387g00007 423 SMART serkin_6 59 329 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc181387g00007 423 Gene3D Transferase(Phosphotransferase) domain 1 135 339 - -
Stsc181387g00007 423 ProSitePatterns Serine/Threonine protein kinases active-site signature. 180 192 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc181387g00007 Stsc-Chr181387 28286 32142 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc181387g00007 47 343 Receptor kinase-like Gene Family AT4G11530 54.181 9.47e-113 343
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Stsc181387g00007 PK_Tyr_Ser-Thr 4.2e-51 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc181387g00007 - - gmx:100795769 620.542