Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc181386g00009 ATGGCTCAGTCCTCGTGCCCGGCGGCGCAACTGGCGCAGTACATCGGCAACAACGCCACAAGCGCTGCAGCCGCTGCAAATCTTATCTGCAACCAGTTTGACGCCGTGACTAAGCAGTTTGCCGCCGTGACTGAGCAGTACACTGACACCAGGCACGCCGTGGACAGCACCTACCTACTCTTCTCAGCCTATCTCGTCTTCTCCATGCAGCTCGGCTTTGCCATGCTCTGCGCCGGCTCCGTCCGAGCCAAGAACACCATGAACATCATGCTCACCAACGTCCTCGACGCCGCCGCCGGCGGTCTCTTCTACTACCTCTTCGGTTTTGCCTTTGCCTTTGGCTCGCCCTCCAATGGCTTCATCGGCCGCCACTTCTTCGGCCTCAGCAAAGTTCCTTCACAAGCTCAGGACTTTGACTACAGCAACTTCCTCTACCAGTGGGCCTTTGCCATCGCCGCCGCTGGCATCACCAGCGGCTCCATCGCAGAGCGAACACAGTTCGTGGCTTACCTCATCTACTCATCCTTCCTCACTGGCTTCGTCTACCCGGTCGTGTCGCATTGGTTCTGGTCCACCAATGGGTGGGCCAGCGCTTTCAACACAGGCAACCTCCTTTTCAACTCCGGAGTCATCGATTTCGCTGGCTCCGGAGTCGTTCACATGGTCGGTGGGATCGCCGGTCTATGGGGTGCCCTAATTGAGGGACCTAGAATTGGCCGGTTTGATCACGCCGGCCGTGCAGTCGCTTTACGTGGGCATAGCGCATCATTGGTGGTACTTGGTACTTTCATGCTCTGGTTTGGTTGGTACGGATTCAACCCAGGCTCTTTCAACAAGATACTAGTTACCTATGACGGATCTGGCAATTATTATGGTCAATGGAGTGCGGTAGGTAGGACAGCCGTCACTACAACATTAGCCGGTTGCACGGCTGCCCTAACAACTCTTTTTGGAAAGAGGATACTGTCTGGTCACTGGAACGTGACTGATGTTTGTAACGGGTTGTTAGGTGGGTTCGCAGCAATCACCGCTGGGTGCTCTGTGGTGGAGCCTTGGGCCGCTATTGTGTGCGGATTTTTTGCCTCCTTGGTGTTGATTGGCTGCAATAAATTGGCTGAAATAGTCAATTATGATGACCCGTTGGAGGCGGCTCAGCTTCATGGCGGCTGCGGCGCGTGGGGTATCATCTTCACTGCTCTCTTTGCGAAGAAGGAATATGTGGATCAGGTATATCAGTCGGGTCGTGGGTACGGGTTGTTCATGGGTGGTGGCGGAAAACTGCTGGCGGCGCACGTGATTCAGATTCTGGTTATTACTGGTTGGGTGAGTGCTACAATGGGTCCACTTTTCTATGTTTTGAGCAAGATGGGCTTGCTTCGGGTCTCACCAGAGGATGAACTCGCGGGTATGGATCTGACCCGACATGGTGGGTTTGCTTATGCTTACGAGGATGACGAATCGCACAAGCATGGGATTCAGTTGAAAAGGATTGAGCCAAATTGTGCTTCTTCTACTCCCACCTCGGTGTGA 1530 0.5431 MAQSSCPAAQLAQYIGNNATSAAAAANLICNQFDAVTKQFAAVTEQYTDTRHAVDSTYLLFSAYLVFSMQLGFAMLCAGSVRAKNTMNIMLTNVLDAAAGGLFYYLFGFAFAFGSPSNGFIGRHFFGLSKVPSQAQDFDYSNFLYQWAFAIAAAGITSGSIAERTQFVAYLIYSSFLTGFVYPVVSHWFWSTNGWASAFNTGNLLFNSGVIDFAGSGVVHMVGGIAGLWGALIEGPRIGRFDHAGRAVALRGHSASLVVLGTFMLWFGWYGFNPGSFNKILVTYDGSGNYYGQWSAVGRTAVTTTLAGCTAALTTLFGKRILSGHWNVTDVCNGLLGGFAAITAGCSVVEPWAAIVCGFFASLVLIGCNKLAEIVNYDDPLEAAQLHGGCGAWGIIFTALFAKKEYVDQVYQSGRGYGLFMGGGGKLLAAHVIQILVITGWVSATMGPLFYVLSKMGLLRVSPEDELAGMDLTRHGGFAYAYEDDESHKHGIQLKRIEPNCASSTPTSV 509
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc181386g00009 509 FunFam Ammonium transporter 36 494 - -
Stsc181386g00009 509 ProSitePatterns Ammonium transporters signature. 212 237 IPR018047 GO:0008519|GO:0016020|GO:0072488
Stsc181386g00009 509 NCBIfam ammonium transporter 55 480 IPR001905 GO:0008519|GO:0016020|GO:0072488
Stsc181386g00009 509 PANTHER AMMONIUM TRANSPORTER 17 483 - -
Stsc181386g00009 509 Pfam Ammonium Transporter Family 58 480 IPR024041 GO:0008519|GO:0016020|GO:0072488
Stsc181386g00009 509 SUPERFAMILY Ammonium transporter 52 461 - -
Stsc181386g00009 509 Gene3D Ammonium transporter AmtB like domains 30 498 IPR029020 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc181386g00009 Stsc-Chr181386 68265 69794 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc181386g00009 5 509 Inorganic Solute Cotransporters AT4G13510 78.016 0.0 795
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc181386g00009 K03320 - gmx:100818774 818.92