Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc181384g00005 ATGCCAGAGTCCTGTGAAGAAAACTCTGAGCTTCCTTCCAAGTCAAAGCCACAAGAAGAACATGGTTTTCCCATGGATTTTGATATATACCTTGAAAGTTCATCATGGAACTTGGATCATAACCCTTCTGCTTCCCAACCCATGTCCCCTTTCATCATAACAACCTCATCTGAACAACCTTTTTCTCCTCTCTGGGTTTTCTCTGATGTTGAAGATGATCACAGCAGGCATGTCAGGGTTGTTGCAGGTGATATTACAAACACAAATTCAGCAACTGAAACTGAAAAACCAGTTGAAAATGATGACAACAAAAAAATAGTGTCACCCCCCTTTGTGCCTCTTCCACATATAAAAATTCCAGATGGTTATTGTCTAATTAAGGAAAGAATGACACAAGCACTTCGCAACTTCAAACAGTTGACTGAACAGAATTTTCTGGCTCAGGTTTGGGCACCTGTGAGGAACGGCAACCGCTATGCACTCACAACTTCGGGTCAACCATTCGTTCTTGATCCACATAGTAATGGGCTGCATCAGTACAGAACAGTTTCCCTGATGTATATGTTTCCTGTTGATGGGGAGAATGACGAAATGTTGGGACTTCCCGGTCGAGTTTTTCAGCAGAAGTTACCTGAATGGACTCCCAATGTTCAGTATTATACTAGCAGAGAGTATTCTCGGAGAAACCATGCACAACATTACAATGTTCGCGGAACGTTGGCTTTGCCTGTGTTTGAATCACCAGGGCAGTCATGTGTTGGTGTAATAGAGCTGATAATGACTTCAGAGAAGGTTAATTATGCTCCTGAGGTTGATAAAGTCTGCAAAGCCCTTGAGGCAGTGAATTTGAGGAGTTCAGAAATTCTGGAACATCCGTTTGCCCAGATTTGCAACGAAGATCGCCAGAATGCATTAGCAGAGATTTTGGAAATATTGACAGTGGTATGCGAAACTCACAATTTACCTCTGGCACAAACATGGGTTCCTTGTAGGCATCGGAGTGTTTTGGCGCATGGCGGCGGTCTTAAGAAAAGCTGTTCTAGTTTCGATGGCCACTGCATGGGGCGAGTTTGCATGTCTACCTCCGATGTAGCATTCTATGTCATTGATGCTCATACATGGGGTTTCCACGATGCTTGCGCTGAGCATCACTTGCAACAAGGTCAAGGTGTTGCTGGCAGGGCATTTTCATCTCATAACATGAGCTTCTGTGGAAACATAACTCAATTCTGCAAAACTGATTATCCTTTAGTTCATTATGCTCTCATGTTCGGGTTAACCAGCTGTTTCGCAATCTGTTTGCAAAGCTCTCATACCGGAAGTGATGAATATGTGTTGGAGTTTTTTCTGCCACCTAATATCACAAACTTTTATGAGCAAAAGTATTTGTTGGGGTCTATATTGTCAACAATGAAGCAGAATTTCCAGAGTCTAAAGGTTGCTGCTGGTGTGGAACTCGAGGAGAGTTGTTCAATTGAAGTTGTAGAACCAATAAATGAAAGAATTCATTTGAGCCTTGAATCTGTTCCGATTGCACAACCTGCTAAATCACCGCCCCCTAGGCTCGACGCCTCACCGAATAAGGGTGATGCAGTGCCACAAGGTCCCCTAGAACAGCAAATGGCGGCATGCTTGGATGATAATGCAGGTGGAAGCACAGATCATATCTCTTCCTTAGAGGGTAAAATCAAGAAGAAACCCTCTGAAAGGAAACGTGGTAAAGCGGAGAAAATGATTAGTCTTGAAGTTTTGCAACGTTATTTCAGTGGGAGTCTGAAGGATGCTGCAAAGAGCCTTGGTGTTTGTCCTACAACTATGAAGCGTATCTGTAGGCAGCATGGAATATCCCGTTGGCCATCGCGAAAGATTAACAAGGTTAACCGTTCCTTGTCGAAGCTCAAGTGTGTCATTGAATCAGTTCAAGGTGCTGAAGGAGCATTTGCTTTGAATTCCGTTAATAAAAACTCATTTACTGAGCCTTGTACTTCAAAGATGTTCAACCAAAATGCCTTGTTGAGCATCCGGCCATCCGAAACTCGGATGAATGAAAATGATTTGGATGCTTCGAGAGTATCAGAAACAAACCGACAGGTCAGGACGCAAGAGAATCAAATTCTCGGAGGGGAACAGAGTCCTGAGAAGGTGATCCAAGAAGAAGGTTGGTCCACTCAAGAAGTTGGCACTAAGGATCCAGAGAGGTTTAGAAATCCTAGTGGTTCAAGTGAAGATAGCGCGAATCATCATTCTCGCAATTCATGCCATGGTAGTCCCCCAAATGAAACTTCACCTGCAAATATATTCAGCACATTCAACAAAGAGAAATCTGTTCTGGTAAGGGGTTCAGCCGAGTCGACAGTGCAGCCAACTAATGCACTGAATTATGCAAATGCGTACACCGTGCTTAACTTCGAGGGAACAGAACCTCAAGAACCATTCGGCAGAATGCTACTCGAGGGTGTTGGTAGTTCTAAAGACTTGAGAAATTTGTGCCCTTTGGAGGATCAGGCTTTAGAAGCTTGTGGGGTTAATCCGCCGTGTGATGACTTGGCTACTAAGCAATGCATGATGGACACTACCCTTAATAGCAACAACACCATGATACCTTCTGCACCTAAGAAAGAGAAGAACAGTGTGACAATTAAGGCAACTTATAAAGAAGATATCATAAGGTTTAGGGTGTCCTTGAACTGTGGCATTGTTGAATTGCAAGAAGAGATTTCAAAGAGATTGAAACTAGAAATTGGAACATTTGATATAAAGTATCTGGATGATGATAATGAATGGGTTTTGATATCATGTGATGCAGATCTTCTGGAATGCATGGATGTTTTAACATCATCAGGAAGCAACATGATAAGGCTTGTGGTGCATGACATAGTTTCCATTCTTGGAAGCTCTTGTGAGAGCTCTGGGAACTGA 2919 0.4296 MPESCEENSELPSKSKPQEEHGFPMDFDIYLESSSWNLDHNPSASQPMSPFIITTSSEQPFSPLWVFSDVEDDHSRHVRVVAGDITNTNSATETEKPVENDDNKKIVSPPFVPLPHIKIPDGYCLIKERMTQALRNFKQLTEQNFLAQVWAPVRNGNRYALTTSGQPFVLDPHSNGLHQYRTVSLMYMFPVDGENDEMLGLPGRVFQQKLPEWTPNVQYYTSREYSRRNHAQHYNVRGTLALPVFESPGQSCVGVIELIMTSEKVNYAPEVDKVCKALEAVNLRSSEILEHPFAQICNEDRQNALAEILEILTVVCETHNLPLAQTWVPCRHRSVLAHGGGLKKSCSSFDGHCMGRVCMSTSDVAFYVIDAHTWGFHDACAEHHLQQGQGVAGRAFSSHNMSFCGNITQFCKTDYPLVHYALMFGLTSCFAICLQSSHTGSDEYVLEFFLPPNITNFYEQKYLLGSILSTMKQNFQSLKVAAGVELEESCSIEVVEPINERIHLSLESVPIAQPAKSPPPRLDASPNKGDAVPQGPLEQQMAACLDDNAGGSTDHISSLEGKIKKKPSERKRGKAEKMISLEVLQRYFSGSLKDAAKSLGVCPTTMKRICRQHGISRWPSRKINKVNRSLSKLKCVIESVQGAEGAFALNSVNKNSFTEPCTSKMFNQNALLSIRPSETRMNENDLDASRVSETNRQVRTQENQILGGEQSPEKVIQEEGWSTQEVGTKDPERFRNPSGSSEDSANHHSRNSCHGSPPNETSPANIFSTFNKEKSVLVRGSAESTVQPTNALNYANAYTVLNFEGTEPQEPFGRMLLEGVGSSKDLRNLCPLEDQALEACGVNPPCDDLATKQCMMDTTLNSNNTMIPSAPKKEKNSVTIKATYKEDIIRFRVSLNCGIVELQEEISKRLKLEIGTFDIKYLDDDNEWVLISCDADLLECMDVLTSSGSNMIRLVVHDIVSILGSSCESSGN 972
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc181384g00005 972 Gene3D - 873 958 - -
Stsc181384g00005 972 Pfam RWP-RK domain 579 626 IPR003035 -
Stsc181384g00005 972 MobiDBLite consensus disorder prediction 87 107 - -
Stsc181384g00005 972 MobiDBLite consensus disorder prediction 693 724 - -
Stsc181384g00005 972 ProSiteProfiles RWP-RK domain profile. 565 646 IPR003035 -
Stsc181384g00005 972 SMART PB1_new 877 959 IPR000270 GO:0005515
Stsc181384g00005 972 MobiDBLite consensus disorder prediction 1 24 - -
Stsc181384g00005 972 MobiDBLite consensus disorder prediction 738 766 - -
Stsc181384g00005 972 MobiDBLite consensus disorder prediction 558 574 - -
Stsc181384g00005 972 ProSiteProfiles PB1 domain profile. 877 959 IPR000270 GO:0005515
Stsc181384g00005 972 MobiDBLite consensus disorder prediction 9 24 - -
Stsc181384g00005 972 CDD PB1_NLP 878 958 IPR034891 -
Stsc181384g00005 972 MobiDBLite consensus disorder prediction 513 532 - -
Stsc181384g00005 972 Pfam PB1 domain 878 958 IPR000270 GO:0005515
Stsc181384g00005 972 SUPERFAMILY CAD & PB1 domains 874 962 - -
Stsc181384g00005 972 MobiDBLite consensus disorder prediction 676 766 - -
Stsc181384g00005 972 MobiDBLite consensus disorder prediction 553 574 - -
Stsc181384g00005 972 PANTHER PROTEIN NLP8 57 972 IPR045012 GO:0003700
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc181384g00005 Stsc-Chr181384 44251 48632 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc181384g00005 878 970 NLP Transcription Factor Family AT1G64530 57.447 1.25e-26 114
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF RWP-RK Stsc181384g00005 PB1 1.2e-19 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc181384g00005 - - gmx:100780901 1347.03